Entering edit mode
LeiaMax2020
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@leiamax2020-24199
Last seen 3.6 years ago
Hi, I am new to Tximport. In the vignette i see that cufflinks is listed among the tools used for transcript abundance,
(library(tximportData)
dir <- system.file("extdata", package = "tximportData")
list.files(dir) )
However I cant find any command or example that show how to import cufflinks files ("isoforms.counttable" "isoforms.fpkmtable" "significant_isoforms.txt")
Can you please provide some help?
Thank you in advance
You may want to edit your posts and add code formatting (backticks, select the text to format and click the 101010 button) to the cufflinks file names to bypass
_being parsed as a markdown character.Your text without code formatting: "isoforms.counttable", "isoforms.fpkmtable", "significant_isoforms.txt" (see how the first two underscore characters italicize words between them)
Your text with code formatting:
isoforms.count_table,isoforms.fpkm_table,significant_isoforms.txt