In edgeR, how am I supposed to be gauging the results of the BCV Plots, the values of common dispersion, tagwise disperson, ect.
0
Entering edit mode
@science555111
Last seen 10 weeks ago

This has been bothering me AND I have seen conflicting information. When it comes to edgeR, how am I supposed to be analyzing the BCV plot to measure up my experimental design? Is it matter of what my BCV hovers around (according to the edgeR vignette, well-controlled human data have BCVs around .2-.4. ) Am I looking to the shape of the distribution along the trend line? What exactly is this telling me, and how is this helpful in improving my design? Appreciate the help.

edger • 181 views
ADD COMMENTlink
1
Entering edit mode

What conflicting information? Please give links to what you have read. Hint: if the conflict is between the edgeR documentation and a random page on the internet, then you can guess which one is correct.

ADD REPLYlink

Login before adding your answer.

Similar Posts
Loading Similar Posts
Traffic: 206 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.4