mzR has been built against a different Rcpp version
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@hollydouglas-24337
Last seen 11 months ago

Hello, I'm trying to install the IsotopicLabelling package in RStudio using:

library(devtools)
install_github("RuggeroFerrazza/IsotopicLabelling", build_vignettes = TRUE) 

The installation requires to loading of the mzR package. I get the following error message during the install:

Error: package or namespace load failed for 'mzR':
 .onLoad failed in loadNamespace() for 'mzR', details:
  call: fun(libname, pkgname)
  error: (converted from warning) mzR has been built against a different Rcpp version (1.0.4.6)
than is installed on your system (1.0.5). This might lead to errors
when loading mzR. If you encounter such issues, please send a report,
including the output of sessionInfo() to the Bioc support forum at 
https://support.bioconductor.org/. For details see also
https://github.com/sneumann/mzR/wiki/mzR-Rcpp-compiler-linker-issue.
Error: package 'mzR' could not be loaded
Execution halted
ERROR: lazy loading failed for package 'IsotopicLabelling'

The output of sessionInfo() is:

R version 4.0.2 (2020-06-22)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 18363)

Matrix products: default

locale:
[1] LC_COLLATE=English_United Kingdom.1252  LC_CTYPE=English_United Kingdom.1252    LC_MONETARY=English_United Kingdom.1252
[4] LC_NUMERIC=C                            LC_TIME=English_United Kingdom.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] devtools_2.3.2 usethis_1.6.3 

loaded via a namespace (and not attached):
 [1] rstudioapi_0.11     magrittr_1.5        pkgload_1.1.0       R6_2.4.1            rlang_0.4.8         fansi_0.4.1         tools_4.0.2        
 [8] pkgbuild_1.1.0      sessioninfo_1.1.1   cli_2.0.2           withr_2.3.0         ellipsis_0.3.1      remotes_2.2.0       assertthat_0.2.1   
[15] digest_0.6.25       rprojroot_1.3-2     crayon_1.3.4        processx_3.4.4      BiocManager_1.30.10 callr_3.5.0         fs_1.5.0           
[22] ps_1.4.0            curl_4.3            testthat_2.3.2      memoise_1.1.0       glue_1.4.2          compiler_4.0.2      desc_1.2.0         
[29] backports_1.1.10    prettyunits_1.1.1  

Any help would be much appreciated. Thanks!

mzR IsotopicLabelling • 404 views
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@laurent-gatto-5645
Last seen 23 hours ago
Belgium

The warning about the mzR/Rcpp versions can be ignored. Unfortunately, it is (if I'm not mistakenbeing) converted to an error by install_github(). I see two options

  1. First install mzR with BiocManager::install("mzR") and ignore the warning. Then proceed with the installation of RuggeroFerrazza/IsotopicLabelling.

  2. Set the environment variable Sys.setenv(R_REMOTES_NO_ERRORS_FROM_WARNINGS="true") before using install_github().

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