News:Bioconductor 3.12 db0s, OrgDbs and TxDbs now available
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@kaylainterdonato-17327
Last seen 1 day ago
United States

Hello Bioconductor Community!

The newest db0s, OrgDbs, and TxDbs annotation packages for the upcoming Bioconductor 3.12 release are up and available for download in the devel version of Bioconductor.

The deadline for submitting contributed annotation will be Wednesday October 21st.

The new db0 packages are:

  • anopheles.db0_3.12.0.tar.gz
  • arabidopsis.db0_3.12.0.tar.gz
  • bovine.db0_3.12.0.tar.gz
  • canine.db0_3.12.0.tar.gz
  • chicken.db0_3.12.0.tar.gz
  • chimp.db0_3.12.0.tar.gz
  • ecoliK12.db0_3.12.0.tar.gz
  • ecoliSakai.db0_3.12.0.tar.gz
  • fly.db0_3.12.0.tar.gz
  • human.db0_3.12.0.tar.gz
  • malaria.db0_3.12.0.tar.gz
  • mouse.db0_3.12.0.tar.gz
  • pig.db0_3.12.0.tar.gz
  • rat.db0_3.12.0.tar.gz
  • rhesus.db0_3.12.0.tar.gz
  • worm.db0_3.12.0.tar.gz
  • xenopus.db0_3.12.0.tar.gz
  • yeast.db0_3.12.0.tar.gz
  • zebrafish.db0_3.12.0.tar.gz

The new OrgDb packages are:

  • GO.db_3.12.0.tar.gz
  • org.Ag.eg.db_3.12.tar.gz
  • org.At.tair.db_3.12.tar.gz
  • org.Bt.eg.db_3.12.tar.gz
  • org.Ce.eg.db_3.12.tar.gz
  • org.Cf.eg.db_3.12.tar.gz
  • org.Dm.eg.db_3.12.tar.gz
  • org.Dr.eg.db_3.12.tar.gz
  • org.EcK12.eg.db_3.12.tar.gz
  • org.EcSakai.eg.db_3.12.tar.gz
  • org.Gg.eg.db_3.12.tar.gz
  • org.Hs.eg.db_3.12.tar.gz
  • org.Mm.eg.db_3.12.tar.gz
  • org.Mmu.eg.db_3.12.tar.gz
  • org.Pf.plasmo.db_3.12.tar.gz
  • org.Pt.eg.db_3.12.tar.gz
  • org.Rn.eg.db_3.12.tar.gz
  • org.Sc.eg.db_3.12.tar.gz
  • org.Ss.eg.db_3.12.tar.gz
  • org.Xl.eg.db_3.12.tar.gz
  • PFAM.db_3.12.tar.gz

The new TxDb packages are:

  • TxDb.Btaurus.UCSC.bosTau8.refGene_3.12.0.tar.gz
  • TxDb.Celegans.UCSC.ce11.ensGene_3.12.0.tar.gz
  • TxDb.Dmelanogaster.UCSC.dm6.ensGene_3.12.0.tar.gz
  • TxDb.Ggallus.UCSC.galGal4.refGene_3.12.0.tar.gz
  • TxDb.Ggallus.UCSC.galGal5.refGene_3.12.0.tar.gz
  • TxDb.Mmulatta.UCSC.rheMac3.refGene_3.12.0.tar.gz
  • TxDb.Mmulatta.UCSC.rheMac8.refGene_3.12.0.tar.gz
  • TxDb.Mmusculus.UCSC.mm39.refGene_3.12.0.tar.gz
  • TxDb.Ptroglodytes.UCSC.panTro4.refGene_3.12.0.tar.gz
  • TxDb.Ptroglodytes.UCSC.panTro5.refGene_3.12.0.tar.gz
  • TxDb.Rnorvegicus.UCSC.rn5.refGene_3.12.0.tar.gz
  • TxDb.Rnorvegicus.UCSC.rn6.ncbiRefSeq_3.12.0.tar.gz
  • TxDb.Sscrofa.UCSC.susScr11.refGene_3.12.0.tar.gz
  • TxDb.Sscrofa.UCSC.susScr3.refGene_3.12.0.tar.gz

Thank you

annotation db0 news release News • 228 views
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Entering edit mode

My apologies - I seem to have a typo in the names of the updated OrgDb packages. Please see the following corrected list:

  • org.Ag.eg.db_3.12.0.tar.gz
  • org.At.tair.db_3.12.0.tar.gz
  • org.Bt.eg.db_3.12.0.tar.gz
  • org.Ce.eg.db_3.12.0.tar.gz
  • org.Cf.eg.db_3.12.0.tar.gz
  • org.Dm.eg.db_3.12.0.tar.gz
  • org.Dr.eg.db_3.12.0.tar.gz
  • org.EcK12.eg.db_3.12.0.tar.gz
  • org.EcSakai.eg.db_3.12.0.tar.gz
  • org.Gg.eg.db_3.12.0.tar.gz
  • org.Hs.eg.db_3.12.0.tar.gz
  • org.Mm.eg.db_3.12.0.tar.gz
  • org.Mmu.eg.db_3.12.0.tar.gz
  • org.Pf.plasmo.db_3.12.0.tar.gz
  • org.Pt.eg.db_3.12.0.tar.gz
  • org.Rn.eg.db_3.12.0.tar.gz
  • org.Sc.eg.db_3.12.0.tar.gz
  • org.Ss.eg.db_3.12.0.tar.gz
  • org.Xl.eg.db_3.12.0.tar.gz
  • PFAM.db_3.12.0.tar.gz
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