Question: Re: Bioconductor digest, Vol 1 #41 - 4 msgs
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17.4 years ago by
HYing20
HYing20 wrote:
This is a multi-part message in MIME format. --=====000_Dragon111552026365_===== Content-Type: text/plain; charset="GB2312" Content-Transfer-Encoding: 7bit bioconductor-request >Send Bioconductor mailing list submissions to > bioconductor@stat.math.ethz.ch > >To subscribe or unsubscribe via the World Wide Web, visit > http://www.stat.math.ethz.ch/mailman/listinfo/bioconductor >or, via email, send a message with subject or body 'help' to > bioconductor-request@stat.math.ethz.ch > >You can reach the person managing the list at > bioconductor-admin@stat.math.ethz.ch > >When replying, please edit your Subject line so it is more specific >than "Re: Contents of Bioconductor digest..." > > >Today's Topics: > > 1. data swirl and the tcltk library... (Joshua Betcher) > 2. Re: data swirl and the tcltk library... (A.J. Rossini) > 3. Re: data swirl and the tcltk library... (Laurent Gautier) > 4. Re: data swirl and the tcltk library... (Jeff Gentry) > >--__--__-- > >Message: 1 >From: "Joshua Betcher" <jb7gv@virginia.edu> >To: <bioconductor@stat.math.ethz.ch> >Date: Wed, 22 May 2002 00:34:07 -0400 >Subject: [BioC] data swirl and the tcltk library... > >I have two questions, one which is very simple and the other which is >probably also. > >1) When I attach marrayinput I get the following error when I attach tcltk: > > Loading required package: tcltk > Error in firstlib(which.lib.loc, package) : > TCL_LIBRARY is not set > >From what I know I need to set this variable. Is there another package I >need? If so what do I do once I get it? If not, how would I overcome this >error? > >2) Eventhough this error occurs I can still attach marryInput. From here >I ran the code data(swirl) and got the following error message: > >Error: restore file may be from a newer version of R -- no data loaded > >Can anyone tell me how to fix this? > >Thanks a lot everyone >Josh > > > > > >--__--__-- > >Message: 2 >To: "Joshua Betcher" <jb7gv@virginia.edu> >Cc: <bioconductor@stat.math.ethz.ch> >Subject: Re: [BioC] data swirl and the tcltk library... >Reply-To: rossini@u.washington.edu >From: rossini@blindglobe.net (A.J. Rossini) >Date: 21 May 2002 22:06:36 -0700 > >>>>>> "joshua" == Joshua Betcher <jb7gv@virginia.edu> writes: > > joshua> I have two questions, one which is very simple and the other which is > joshua> probably also. > > joshua> 1) When I attach marrayinput I get the following error when I attach tcltk: > > joshua> Loading required package: tcltk > joshua> Error in firstlib(which.lib.loc, package) : > joshua> TCL_LIBRARY is not set > > >> From what I know I need to set this variable. Is there another package I > joshua> need? If so what do I do once I get it? If not, how would I overcome this > joshua> error? > >Are you running under MS Windows? If not, does R have TCL/TK >incorporated? > > joshua> 2) Eventhough this error occurs I can still attach marryInput. From here > joshua> I ran the code data(swirl) and got the following error message: > > joshua> Error: restore file may be from a newer version of R -- no data loaded > > joshua> Can anyone tell me how to fix this? > >I think you might be using a version of R < 1.5.0? (I messed up the >initial announcement, but it should be clear on the WWW site that >1.4.1 and earlier won't quite work). > >-- >A.J. Rossini Rsrch. Asst. Prof. of Biostatistics >U. of Washington Biostatistics rossini@u.washington.edu >FHCRC/SCHARP/HIV Vaccine Trials Net rossini@scharp.org >-------------- http://software.biostat.washington.edu/ ---------------- >FHCRC: M-W: 206-667-7025 (fax=4812)|Voicemail is pretty sketchy/use Email >UW: Th: 206-543-1044 (fax=3286)|Change last 4 digits of phone to FAX >(my friday location is usually completely unpredictable.) > > > >--__--__-- > >Message: 3 >Date: Wed, 22 May 2002 08:51:11 +0200 >From: Laurent Gautier <laurent@cbs.dtu.dk> >To: Joshua Betcher <jb7gv@virginia.edu> >Cc: bioconductor@stat.math.ethz.ch >Subject: Re: [BioC] data swirl and the tcltk library... > >On Wed, May 22, 2002 at 12:34:07AM -0400, Joshua Betcher wrote: >> I have two questions, one which is very simple and the other which is >> probably also. >> >> 1) When I attach marrayinput I get the following error when I attach tcltk: >> >> Loading required package: tcltk >> Error in firstlib(which.lib.loc, package) : >> TCL_LIBRARY is not set >> >> >From what I know I need to set this variable. Is there another package I >> need? If so what do I do once I get it? If not, how would I overcome this >> error? > > >I suspect this comes from the fact you do not have the package 'tcltk' installed... >and from the fact you use Outlook as a mailer, I suspect you are reporting this >for the Windows version... > > > > > >> >> 2) Eventhough this error occurs I can still attach marryInput. From here >> I ran the code data(swirl) and got the following error message: >> >> Error: restore file may be from a newer version of R -- no data loaded > > >raahhhh... again.... > > >> >> Can anyone tell me how to fix this? >> > > >We know what happens (sigh):this is a binary file and the CVS >for Bioconductor seems to be in 'gotcha mode' (i.e. screws up the binary files >on windows...)... we are working on it to get this fixed >(if urgent need, I can send you the file). > > > >Hopin' it helps, > > > >L. > > > > >-------------------------------------------------------------- >Laurent Gautier CBS, Building 208, DTU >PhD. Student D-2800 Lyngby,Denmark >tel: +45 45 25 24 85 http://www.cbs.dtu.dk/laurent > >--__--__-- > >Message: 4 >Date: Wed, 22 May 2002 05:12:00 -0400 (EDT) >From: Jeff Gentry <jgentry@jimmy.harvard.edu> >To: Laurent Gautier <laurent@cbs.dtu.dk> >cc: Joshua Betcher <jb7gv@virginia.edu>, bioconductor@stat.math.ethz.ch >Subject: Re: [BioC] data swirl and the tcltk library... > >> We know what happens (sigh):this is a binary file and the CVS >> for Bioconductor seems to be in 'gotcha mode' (i.e. screws up the binary files >> on windows...)... we are working on it to get this fixed >> (if urgent need, I can send you the file). > >It is no longer a CVS problem - the code is fixed in CVS. The windows >builds need to be redone. > > > >--__--__-- > >_______________________________________________ >Bioconductor mailing list >Bioconductor@stat.math.ethz.ch >http://www.stat.math.ethz.ch/mailman/listinfo/bioconductor > > >End of Bioconductor Digest = = = = = = = = = = = = = = = = = = = = Before you require library tcltk, you need type Sys.putenv("TCL_LIBRARY"="D:\\Tcl\\lib\\tcl8.3") (If you have installed tcl software in PATH d:\\tcl) . It seems there are lots of data cannot be loaded, such as golub.Rdata in multtest package. I have installed R version 1.5.0 in my Windows Platform, but it still told me "Error: restore file may be from a newer version of R -- no data loaded". There seems some problems about geneplotter package, cPlot and cColor function cannot be executed correctly. And I found these functions both need "plotData" function, but there is not such function in R functions. HYing hying99@mails.tsinghua.edu.cn 2002-05-27 --=====000_Dragon111552026365_===== Content-Type: image/gif; name="PIKAQU.GIF" Content-Transfer-Encoding: base64 Content-Disposition: FoxmailIcon; filename="PIKAQU.GIF" R0lGODlhIAAgAKIAAFUAACoAAP9fAP+/AP+fAP//AAAAAACAgCH/C05FVFNDQVBFMi4wAw EAAAAh /g5CdWlsdCBieSBaaXBweQAh+QQBZAAHACwAAAAAIAAgAAAD/ni63P4wykmrveSYS7P5m/ MdmWUQ wPiARkBkKAiU51AMbgCIgD0YqV5hOAgSfLHhrlG7BWzD6E1ATA4DK8EPKiUOtASBIRpaGQ bH7m3A FggCUWwEQC8Quqgo/V6QR84fXFcfRGcFAH4QAIdjcFEaB3YCM3xLWYJqkmFAfIkMBm59OE KLQ25u YycBZUxubE84T1FhqDNiJQ89bLu8UJuULhIoaC/FL1o3qagTZ8bOAnypiBRj0M5hUkUfni tHLsZw X7vbFS1Fu8MEsGgtFy1Hu5MubJu4E6vWL/QEQNCTJi8AuCnGzobAEwA3DQwj8AgobhJATZ KRwk0K iBNSOODXCY6Dx48gQ35MAAAh+QQBZAAHACwAAAAAIAAgAAAD/ni63P4wykmrveSYS7P5m/ MdmWUQ wPiARkBkKAiU51AMbgCIgD0YqV5hOAgSfLHhrlG7BWzD6E1ATA4DK8EPKiUOtASBIRpaGQ bH7m3A FggCUWwEAFAPCVI6viCPnEFSLR9EZwUAfRB1cXYFYTN7S1lcjGFhQHuIDAZufDhCigVubm MnAWVM bmxPOE9RYaMzYiUPPWy2t1CWjy4SKGgvwC9aN6SjE2fByQJ7pIcUY8vJYVJFH5krRy7BcF +21hUt Rba+BKtoLRctR7YCh+uWsxOm0S9sL0DL7SYvAG7A5zb6ndhnyZ+jZT/ecNjUTkYKNymuUU jhgMA3 DhgzatyYAjEBADs= --=====000_Dragon111552026365_=====--
geneplotter multtest • 522 views
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