[SPAM?] Bioconductor Digest, Vol 41, Issue 22 (Out of Office)
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I'm out of the office until July 28th. Please contact liz higgins if you need assistance @ 636-0163. >>> bioconductor 07/22/06 06:00 >>> Send Bioconductor mailing list submissions to bioconductor at stat.math.ethz.ch To subscribe or unsubscribe via the World Wide Web, visit https://stat.ethz.ch/mailman/listinfo/bioconductor or, via email, send a message with subject or body 'help' to bioconductor-request at stat.math.ethz.ch You can reach the person managing the list at bioconductor-owner at stat.math.ethz.ch When replying, please edit your Subject line so it is more specific than "Re: Contents of Bioconductor digest..." Today's Topics: 1. MySQL databases offering gene expression, esp. toxicogenomics data (N. Goodacre) 2. Error: cannot allocate vector of size ... (Wall, Dennis Paul) 3. Re: MySQL databases offering gene expression, esp. toxicogenomics data (Arne.Muller at sanofi-aventis.com) 4. Re: Error: cannot allocate vector of size ... (James W. MacDonald) 5. Re: Error: cannot allocate vector of size ... (M L Smith) 6. Re: ABPackageBuilder not building GO package? (Nianhua Li) 7. Re: Error: cannot allocate vector of size ... (Levi Waldron) 8. Re: MySQL databases offering gene expression, esp. toxicogenomics data (Seth Falcon) 9. artifact in MA plots (Matthew Scholz) 10. error in simpleaffy qc: I'm sorry, I do not know about chip type: poplarcdf (Levi Waldron) 11. Re: Missing chromosomal locations in hgu133a package (John Zhang) 12. Problem regardign ReadAffy() (Nayeem Quayum) 13. Re: Missing chromosomal locations in hgu133a package (Nianhua Li) 14. Re: ABPackageBuilder not building GO package? (Eric J. Kort) 15. Re: ABPackageBuilder not building GO package? (Nianhua Li) 16. Quick illumina question (Sean Davis) 17. Re: Quick illumina question (Oosting, J. (PATH)) ---------------------------------------------------------------------- Message: 1 Date: 21 Jul 2006 03:36:08 +0100 From: "N. Goodacre" <ng296@cam.ac.uk> Subject: [BioC] MySQL databases offering gene expression, esp. toxicogenomics data To: bioconductor at stat.math.ethz.ch Message-ID: <prayer.1.0.17.0607210336080.10500 at="" hermes-2.csi.cam.ac.uk=""> Content-Type: text/plain; format=flowed; charset=ISO-8859-1 Dear Bioconductor mailing group, I would like to ask if anyone knows of a solid toxicogenomics database under MySQL - i.e. one with expression profiles for a number of toxicities. If it helps, the toxicities I am interested in are hepatotoxicities. I am a little shaky on just who gets to use MySQL and who does not, especially for Bioinformatians, so perhaps if someone could run over this for me, that would be greatly appreciated as well. Sincerely, Norman Goodacre ------------------------------ Message: 2 Date: Fri, 21 Jul 2006 07:55:18 -0400 From: "Wall, Dennis Paul" <dennis_wall@hms.harvard.edu> Subject: [BioC] Error: cannot allocate vector of size ... To: "Bioconductor" <bioconductor at="" stat.math.ethz.ch=""> Message-ID: <3F9010CC205E6F49B4165C01C4B344FDC0AB49 at MAILSERVER01.MED.HARVARD.EDU> Content-Type: text/plain; charset="us-ascii" I am trying to run the pam algorithm for k-means clustering, but keep getting the error "Error: cannot allocate vector of size 1048384 K" Any help on how to fix this would be greatly appreciated. Cheers, Dennis ------------------------------ Message: 3 Date: Fri, 21 Jul 2006 18:04:05 +0200 From: <arne.muller@sanofi-aventis.com> Subject: Re: [BioC] MySQL databases offering gene expression, esp. toxicogenomics data To: <ng296 at="" cam.ac.uk="">, <bioconductor at="" stat.math.ethz.ch=""> Message-ID: <c80ecafa2acc1b45be45d133ed660ade02e8cc5b at="" crbsmxsusr04=""> Content-Type: text/plain; charset="iso-8859-1" Hello, I don't know about any mysql db for toxicogenomics but I guess you're interested in the data rather than the underlying database software. There's the ILSI project on collecting toxicogenomics data together with classical toxicology measures. Check www.ilsi.org and search for toxicogenomics (actually it does not return much ...). We've participated in this cross-institutional/company project and submitted our data to ArrayExpress at the EBI, others have submitted theirs to GEO at the NCBI. You could look for 'ILSI' related projects in there. ArrayExpress returns 14 experiments. Sounds like a big project to gather all this data in areasonable way ... I know that GeneLogic offers a commercial database with in-house generated expression data + toxicities for several reference compounds in several tissues. hope this helps, +regards, Arne -----Original Message----- From: bioconductor-bounces@stat.math.ethz.ch [mailto:bioconductor-bounces at stat.math.ethz.ch]On Behalf Of N. Goodacre Sent: Friday, July 21, 2006 04:36 To: bioconductor at stat.math.ethz.ch Subject: [BioC] MySQL databases offering gene expression,esp. toxicogenomics data Dear Bioconductor mailing group, I would like to ask if anyone knows of a solid toxicogenomics database under MySQL - i.e. one with expression profiles for a number of toxicities. If it helps, the toxicities I am interested in are hepatotoxicities. I am a little shaky on just who gets to use MySQL and who does not, especially for Bioinformatians, so perhaps if someone could run over this for me, that would be greatly appreciated as well. Sincerely, Norman Goodacre _______________________________________________ Bioconductor mailing list Bioconductor at stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor ------------------------------ Message: 4 Date: Fri, 21 Jul 2006 11:48:06 -0400 From: "James W. MacDonald" <jmacdon@med.umich.edu> Subject: Re: [BioC] Error: cannot allocate vector of size ... To: Bioconductor <bioconductor at="" stat.math.ethz.ch=""> Message-ID: <44C0F736.1030702 at med.umich.edu> Content-Type: text/plain; charset="utf-8"; format=flowed Wall, Dennis Paul wrote: > I am trying to run the pam algorithm for k-means clustering, but keep > getting the error "Error: cannot allocate vector of size 1048384 K" > > Any help on how to fix this would be greatly appreciated. That error means you are running out of RAM. The quickest, best fix is to get more. Best, Jim > > > Cheers, > > Dennis > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- James W. MacDonald, M.S. Biostatistician Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623 ********************************************************** Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues. ------------------------------ Message: 5 Date: Fri, 21 Jul 2006 17:24:16 +0100 From: "M L Smith" <mls40@cam.ac.uk> Subject: Re: [BioC] Error: cannot allocate vector of size ... To: Bioconductor at stat.math.ethz.ch Message-ID: <44C10DC0.14668.1308575 at localhost> Content-Type: text/plain; charset=US-ASCII Hi Paul, If you've followed that advice or you've already got plenty of RAM you can try the command: memory.limit(2048) This should allow R to use 2Gb of RAM (the max it can use on a normal Windows machine), rather than the 1Gb it defaults too. Mike Smith > Wall, Dennis Paul wrote: > > I am trying to run the pam algorithm for k-means clustering, but keep > > getting the error "Error: cannot allocate vector of size 1048384K" > > > > Any help on how to fix this would be greatly appreciated. > > That error means you are running out of RAM. The quickest, best fix is > to get more. > > Best, > > Jim > > > > > > > > Cheers, > > > > Dennis > > > > _______________________________________________ -- Computational Biology Group Hutchison / MRC Research Centre Department of Oncology University of Cambridge Hills Rd, Cambridge CB2 2XZ Email: mls40 at cam.ac.uk ------------------------------ Message: 6 Date: Fri, 21 Jul 2006 16:09:53 +0000 (UTC) From: Nianhua Li <nli@fhcrc.org> Subject: Re: [BioC] ABPackageBuilder not building GO package? To: bioconductor at stat.math.ethz.ch Message-ID: <loom.20060721t175858-725 at="" post.gmane.org=""> Content-Type: text/plain; charset=us-ascii Hi, Eric, The "error" messages about KEGG urls are not really errors, so you can ignore them. And the information about removing datasets are normal messages as well. Could you please try: ABPkgBuilder(baseName="keyp.txt", baseMapType="gb", pkgName="vaimm06", pkgPath="./", organism="Mus musculus", version="0.1", author=list(author="Eric J. Kort", maintainer="Eric J. Kort")) It is the same as your code except that "srcUrls" is removed. Let me know if it doesn't work thanks Nianhua Li Computational Biology, PHS, FHCRC ------------------------------ Message: 7 Date: Fri, 21 Jul 2006 12:43:51 -0400 From: "Levi Waldron" <levi.waldron@utoronto.ca> Subject: Re: [BioC] Error: cannot allocate vector of size ... To: Bioconductor at stat.math.ethz.ch Message-ID: <7a09e3940607210943n25136f7bkc2f947835383cecc at mail.gmail.com> Content-Type: text/plain; charset=UTF-8; format=flowed I'm not sure if this will help, but this is an exerpt from the affy vignette: 5. Read in the data and create an expression, using RMA for example. R> Data <- ReadAffy() ##read data in working directory R> eset <- rma(Data) Depending on the size of your dataset and on the memory available to your system, you might experience errors like 'Cannot allocate vector . . . '. An obvious option is to increase the memory available to your R process (by adding memory and/or closing external applications2 . An another option is to use the function justRMA. R> eset <- justRMA() This reads the data and performs the 'RMA' way to preprocess them at the C level. One does not need to call ReadAffy, probe level data is never stored in an A?yBatch. rma continues to be the recommended function for computing RMA. ------------------------------ Message: 8 Date: Fri, 21 Jul 2006 10:29:41 -0700 From: Seth Falcon <sfalcon@fhcrc.org> Subject: Re: [BioC] MySQL databases offering gene expression, esp. toxicogenomics data To: bioconductor at stat.math.ethz.ch Message-ID: <m2bqri7toa.fsf at="" ziti.local=""> Content-Type: text/plain; charset=us-ascii "N. Goodacre" <ng296 at="" cam.ac.uk=""> writes: > Dear Bioconductor mailing group, > > I would like to ask if anyone knows of a solid toxicogenomics database > under MySQL - i.e. one with expression profiles for a number of > toxicities. I'm not aware of such a database. > I am a little shaky on just who gets to use MySQL and who does not, > especially for Bioinformatians, so perhaps if someone could run over > this for me, that would be greatly appreciated as well. I'm not sure what you mean. Anyone who knows how gets to use MySQL. MySQL is released under the GPL. Is that your question? + seth ------------------------------ Message: 9 Date: Fri, 21 Jul 2006 11:20:54 -0700 From: "Matthew Scholz" <schmatthew@gmail.com> Subject: [BioC] artifact in MA plots To: bioconductor at stat.math.ethz.ch Message-ID: <3035b8df0607211120n6b2dd0bo571d4b67e14a60d7 at mail.gmail.com> Content-Type: text/plain Hi all, I have some data (10 arrays with ~25000 features each, hybed in a loop design) that I wanted to background correct because of apparent non-linearities observed in MA plots. After applying a kooperberg correction, I replotted the data and noticed that while the overall set was much "tighter" and more linear than before correction, a new artifact appeared in the plots. Namely, rather than all plotting on a horizontal line, the data took the shape of the open jaw of a shark, with the upper jaw horizontal as it should be but a lower jaw of data sloping downward from the horizonal at a 45 degree angle. This was all lower intensity data that plotted in the under 10 log-units region of the MA plot. I tried simple background subtraction, but this did not eliminate the non-linearities I originally observed. I dont' really understand this message as these were nice hybs with backgrounds around 100-150 RFU, average signals around 4000RFU and no notable irregularities. Can anyone advise me? Thanks in advance of your reply, Matt -- Matt Scholz Senior Research Specialist Department of Plant Sciences University of Arizona (520) 621-1695 [[alternative HTML version deleted]] ------------------------------ Message: 10 Date: Fri, 21 Jul 2006 16:13:27 -0400 From: "Levi Waldron" <levi.waldron@utoronto.ca> Subject: [BioC] error in simpleaffy qc: I'm sorry, I do not know about chip type: poplarcdf To: bioconductor at stat.math.ethz.ch Message-ID: <7a09e3940607211313u1332cdcdycc537e4705c364d8 at mail.gmail.com> Content-Type: text/plain; charset=ISO-8859-1; format=flowed > library(simpleaffy) > x <- read.affy("covdesc") > x.mas5 <- call.exprs(x,"mas5") Background correcting Retrieving data from AffyBatch...done. Computing expression calls... ......done. scaling to a TGT of 100 ... Scale factor for: bot0343.CEL 1.19431517356046 Scale factor for: bot0344.CEL 1.25599200206275 Scale factor for: bot0345.CEL 1.72226407855678 Scale factor for: bot0340.CEL 1.45162850888082 Scale factor for: bot0341.CEL 0.960621730495837 Scale factor for: bot0342.CEL 1.34367816094756 > qc <- qc(x,x.mas5) Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: poplarcdf Note that in the sessionInfo() output below I have simpleaffy 2.4.2 which was installed by biocLite. Afterwards I manually upgraded simpleaffy to 2.6.0, which had no effect. Any suggestions? > cdfName(raw.data) [1] "Poplar" > sessionInfo() Version 2.3.1 (2006-06-01) i486-pc-linux-gnu attached base packages: [1] "splines" "tools" "methods" "stats" "graphics" "grDevices" [7] "utils" "datasets" "base" other attached packages: poplarcdf simpleaffy genefilter survival affy affyio Biobase "1.12.0" "2.4.2" "1.10.1" "2.26" "1.10.0" "1.0.0" "1.10.1" after upgrading simpleaffy: > sessionInfo() Version 2.3.1 (2006-06-01) i486-pc-linux-gnu attached base packages: [1] "splines" "tools" "methods" "stats" "graphics" "grDevices" [7] "utils" "datasets" "base" other attached packages: poplarcdf simpleaffy genefilter survival affy affyio Biobase "1.12.0" "2.6.0" "1.10.1" "2.26" "1.10.0" "1.0.0" "1.10.1" ------------------------------ Message: 11 Date: Fri, 21 Jul 2006 16:38:26 -0400 (EDT) From: John Zhang <jzhang@jimmy.harvard.edu> Subject: Re: [BioC] Missing chromosomal locations in hgu133a package To: jzhang at jimmy.harvard.edu, hilmar.berger at imise.uni- leipzig.de, bioconductor at stat.math.ethz.ch Message-ID: <20060721203826.2E5D64CCD9 at pascal.dfci.harvard.edu> Content-Type: TEXT/plain; charset=ISO-8859-1 >>>thanks for Your answer. I'm aware of the fact I could create annotation >>>packages on my own using AnnBuilder. However, the comparison I mentioned >>>was of GoldenPath data and annotation packages of about the same date >>>(mid 2005), and even current annotation packages show this discrepancy >>>in the number of chromosomal locations provided in hgu133a. So I >>>wondered if there is some good reason to not provide chromosomal >>>locations for some probesets (e.g. unreliable mappings in GoldenPath) or >>>if this is because of special paths AnnBuilder uses to merge all sources. >> There may be two reasons. 1. AnnBuilder uses RefLink.txt and RefGene.txt from Golden Path for annotation. Location data were missing from the file for some of the genes/probes(ie. 8847/216856_s_at) in a test run. Need to talk to Golden Path about htis. 2. The base file used to build the annotation package may not be in sync with the current probe-GB mapping provided by AffyMetrix. Nianhua, do you know if a fresh download from AffyMetrix was used for release 1.8? >> >> AnnBuilder does not make any decision on who gets mapped and who does not. I >> will have to step through the mapping process to tell you what might be the >> problem. Could you give me a few of the probes that are missed again? >> >> Thanks. >> >> >> >>>Regards, >>>Hilmar >>> >>>_______________________________________________ >>>Bioconductor mailing list >>>Bioconductor at stat.math.ethz.ch >>>https://stat.ethz.ch/mailman/listinfo/bioconductor >>>Search the archives: >> >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> >> Jianhua Zhang >> Department of Medical Oncology >> Dana-Farber Cancer Institute >> 44 Binney Street >> Boston, MA 02115-6084 >> > >-- > >Hilmar Berger >Studienkoordinator >Institut f?r medizinische Informatik, Statistik und Epidemiologie >Universit?t Leipzig >H?rtelstr. 16-18 >D-04107 Leipzig > >Tel. +49 341 97 16 101 >Fax. +49 341 97 16 109 >email: hilmar.berger at imise.uni-leipzig.de Jianhua Zhang Department of Medical Oncology Dana-Farber Cancer Institute 44 Binney Street Boston, MA 02115-6084 ------------------------------ Message: 12 Date: Fri, 21 Jul 2006 15:46:03 -0600 From: "Nayeem Quayum" <nayeemquayum@gmail.com> Subject: [BioC] Problem regardign ReadAffy() To: bioconductor at stat.math.ethz.ch Message-ID: <af6d2ccc0607211446r5bb31dcj9794bbf2eb887d28 at="" mail.gmail.com=""> Content-Type: text/plain Hello everybody, I was trying to load HGU133 data set in to bioconductor for some analysis. But I got an error. Any kind of help would be appreciated. The code is very simple library(affy) Data <- ReadAffy() I invoked R from the directory where all the CEL files are resided. But I am getting the following error. Error in initialize(value, ...) : Cel file /home/dev/Desktop/temp/INF alpha/Exo_A_U133B.CEL does not seem to be of HG-U133A type Thanks. [[alternative HTML version deleted]] ------------------------------ Message: 13 Date: Fri, 21 Jul 2006 22:57:41 +0000 (UTC) From: Nianhua Li <nli@fhcrc.org> Subject: Re: [BioC] Missing chromosomal locations in hgu133a package To: bioconductor at stat.math.ethz.ch Message-ID: <loom.20060722t005043-363 at="" post.gmane.org=""> Content-Type: text/plain; charset=us-ascii > 2. The base file used to build the annotation package may not be in sync with > the current probe-GB mapping provided by AffyMetrix. Nianhua, do you know if a > fresh download from AffyMetrix was used for release 1.8? > The probe-GB mapping from Affymetrix that was used for release 1.8 was dated Dec. 19, 2005. Six files were used to get unified probe to Entrez Gene mapping: 1. probe-GB mapping from Affymetrix 2. probe-UniGene mapping from Affymetrix 3. probe-Entrez Gene mapping from Affymetrix 4. probe-Entrez Gene mapping from DCHIP 5. probe-Entrez Gene mapping from U. Michigan 6. probe-Entrez Gene mapping from another source (EA) 1 is the primary source, and 2-6 are supplimental sources. 1-3 are all dated Dec 19, 2005. 4-6 are pretty old files (>1 years old). thanks nianhua ------------------------------ Message: 14 Date: Fri, 21 Jul 2006 23:37:56 +0000 From: "Eric J. Kort" <eric.kort@exsilico.biz> Subject: Re: [BioC] ABPackageBuilder not building GO package? To: "Nianhua Li" <nli at="" fhcrc.org="">, bioconductor at stat.math.ethz.ch Message-ID: <w2504525311296351153525076 at="" webmail8=""> Content-Type: text/plain; charset="us-ascii" Hi Nianhua. No...the syntax you suggested resulted in the same set of annotation objects being built, with no GO annotation. Any other thoughts? Thanks, -Eric >From: Nianhua Li [mailto:nli at fhcrc.org] >Sent: Friday, July 21, 2006 12:09 PM >To: bioconductor at stat.math.ethz.ch >Subject: Re: [BioC] ABPackageBuilder not building GO package? > >Hi, Eric, > >The "error" messages about KEGG urls are not really errors, so you can ignore >them. And the information about removing datasets are normal messages as well. >Could you please try: > >ABPkgBuilder(baseName="keyp.txt", baseMapType="gb", pkgName="vaimm06", >pkgPath="./", organism="Mus musculus", version="0.1", author=list(author="Eric >J. Kort", maintainer="Eric J. Kort")) > >It is the same as your code except that "srcUrls" is removed. Let me know if it >doesn't work > >thanks > >Nianhua Li >Computational Biology, PHS, FHCRC > >_______________________________________________ >Bioconductor mailing list >Bioconductor at stat.math.ethz.ch >https://stat.ethz.ch/mailman/listinfo/bioconductor >Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > ------------------------------ Message: 15 Date: Fri, 21 Jul 2006 18:33:26 -0700 From: Nianhua Li <nli@fhcrc.org> Subject: Re: [BioC] ABPackageBuilder not building GO package? To: "Eric J. Kort" <eric.kort at="" exsilico.biz=""> Cc: bioconductor at stat.math.ethz.ch Message-ID: <44C18066.109 at fhcrc.org> Content-Type: text/plain; charset=ISO-8859-1; format=flowed Hi, Eric, I used a baseFile to test the script, and got a perfectly valid package. Maybe your base file "keyp.txt" or your network configuration have some problem? The script I used is : vaimm06 <- function(pkgPath, version) { ABPkgBuilder(baseName="mouse4302.GeneBankID", baseMapType="gb", pkgName="vaimm06", pkgPath=pkgPath, organism="Mus musculus", version=version, author=list(authors="Eric J. Kort", maintainer="Eric J. Kort <eric.kort at="" exsilico.biz="">") ) } vaimm06(getwd(), "0.1") And the base file "mouse4302.GeneBankID" looks like: 41484_r_at X56681 41485_at X02152 41486_at U82396 41487_at W72400 41488_at AC002394 41489_at M99435 41490_at Y00971 41491_s_at AB028944 41492_r_at AB028944 41493_at AI094610 41494_at X99802 41495_at W37606 41496_at AL050189 41497_at AI401296 41498_at AB020718 41499_at X15218 414_at X59373 41500_at AI761818 41501_at AF004849 41502_at AI523538 41503_at AB020661 41504_s_at AF055376 ... And my environment is (I don't think it is important for this problem though): > sessionInfo() R version 2.4.0 Under development (unstable) (2006-05-19 r38133) x86_64-unknown-linux-gnu attached base packages: [1] "tools" "methods" "stats" "graphics" "grDevices" "utils" [7] "datasets" "base" other attached packages: AnnBuilder RSQLite DBI annotate XML Biobase "1.11.4" "0.4-1" "0.1-10" "1.9.6" "0.99-8" "1.9.28" good luck nianhua ------------------------------ Message: 16 Date: Fri, 21 Jul 2006 21:53:41 -0400 From: Sean Davis <sdavis2@mail.nih.gov> Subject: [BioC] Quick illumina question To: Bioconductor <bioconductor at="" stat.math.ethz.ch=""> Message-ID: <c0e6fd65.162f%sdavis2 at="" mail.nih.gov=""> Content-Type: text/plain; charset="US-ASCII" I have been looking at some raw illumina data. The results are reported with the illumicode id. I can't seem to find where I can convert the illumicode to the actual associated sequence. Can someone who is using illumina arrays point me in the right direction? Thanks, Sean ------------------------------ Message: 17 Date: Sat, 22 Jul 2006 08:32:02 +0200 From: "Oosting, J. \(PATH\)" <j.oosting@lumc.nl> Subject: Re: [BioC] Quick illumina question To: "Sean Davis" <sdavis2 at="" mail.nih.gov="">, "Bioconductor" <bioconductor at="" stat.math.ethz.ch=""> Message-ID: <40964D91251A18469CB08B6E96FB30BA0EF7EF at mailc.lumcnet.prod.intern> Content-Type: text/plain Hi Sean, For the Golden Gate SNP arrays, Illumina delivers you .opa files that contain annotations and which can be used to connect IllumiCode to other variables. I have no experience with the other type of arrays, but I guess that should be about the same. Jan -----Original Message----- From: bioconductor-bounces@stat.math.ethz.ch on behalf of Sean Davis Sent: Sat 22-Jul-06 3:53 AM To: Bioconductor Subject: [BioC] Quick illumina question I have been looking at some raw illumina data. The results are reported with the illumicode id. I can't seem to find where I can convert the illumicode to the actual associated sequence. Can someone who is using illumina arrays point me in the right direction? Thanks, Sean _______________________________________________ Bioconductor mailing list Bioconductor at stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor [[alternative HTML version deleted]] ------------------------------ _______________________________________________ Bioconductor mailing list Bioconductor at stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/bioconductor End of Bioconductor Digest, Vol 41, Issue 22
SNP Microarray Annotation GO Network Clustering Survival Cancer hgu133a cdf probe affy • 1.1k views
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