GEOquery : 'cannot open URL'
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@glazko-galina-1653
Last seen 9.6 years ago
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@sean-davis-490
Last seen 3 months ago
United States
On Thursday 31 August 2006 10:22, Glazko, Galina wrote: > Dear all, > > When I am trying to use GEOquery package, I get an error message: > > gse <- getGEO("GSE1132") > > trying URL > 'ftp://ftp.ncbi.nih.gov/pub/geo/data/geo/by_series/GSE462_family.sof t.gz > ' > > Error in download.file(myurl, destfile, mode = mode) : > > cannot open URL > 'ftp://ftp.ncbi.nih.gov/pub/geo/data/geo/by_series/GSE462_family.sof t.gz > ' > > > > May be I have to update the package or reinstall? Yes, Galina. You are correct. NCBI GEO made changes to the URL for downloading a few weeks ago. You will need GEOquery 1.7.2, I believe. Sean
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