installation of made4 package
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Weiwei Shi ★ 1.2k
@weiwei-shi-1407
Last seen 9.6 years ago
hi, I tried to install made4 package from http://www.bioconductor.org/packages/1.8/bioc/html/made4.html by downloading the package and installing from > biocLite("../../../dls/r/bioconductor_packages/made4_1.6.0.tar") Running getBioC version 0.1.8 with R version 2.3.1 Running biocinstall version 1.8.5 with R version 2.3.1 Your version of R requires version 1.8 of Bioconductor. dependency ''../../../dls/r/bioconductor_packages/made4_1.6.0.tar'' is not available but its dependency has been installed, proved by > library(scatterplot3d) > library(ade4) > so I am wondering if i missed something here? thanks. R version _ platform i686-pc-linux-gnu arch i686 os linux-gnu system i686, linux-gnu status major 2 minor 3.1 year 2006 month 06 day 01 svn rev 38247 language R version.string Version 2.3.1 (2006-06-01) -- Weiwei Shi, Ph.D Research Scientist GeneGO, Inc. "Did you always know?" "No, I did not. But I believed..." ---Matrix III
made4 made4 • 1.3k views
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Seth Falcon ★ 7.4k
@seth-falcon-992
Last seen 9.6 years ago
"Weiwei Shi" <helprhelp at="" gmail.com=""> writes: > Actually, i need to copy that package.tar.gz into the current working > directory of R and run the following. > > it seems that biocLite does not accept "path" and only accepts the > package name. biocLite is _only_ a tool for _downloading_ packages from BioC package repositories and installing them. If you want to install packages stored on local disk, use install.packages.
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i got it. i always thot i need to grab the gz package by myself. thanks. On 9/22/06, Seth Falcon <sfalcon at="" fhcrc.org=""> wrote: > "Weiwei Shi" <helprhelp at="" gmail.com=""> writes: > > > Actually, i need to copy that package.tar.gz into the current working > > directory of R and run the following. > > > > it seems that biocLite does not accept "path" and only accepts the > > package name. > > biocLite is _only_ a tool for _downloading_ packages from BioC package > repositories and installing them. > > If you want to install packages stored on local disk, use > install.packages. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > -- Weiwei Shi, Ph.D Research Scientist GeneGO, Inc. "Did you always know?" "No, I did not. But I believed..." ---Matrix III
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@sean-davis-490
Last seen 12 weeks ago
United States
On Friday 22 September 2006 15:01, Weiwei Shi wrote: > hi, > I tried to install made4 package from > http://www.bioconductor.org/packages/1.8/bioc/html/made4.html Does: biocLite('made4') work? Sean
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Actually, i need to copy that package.tar.gz into the current working directory of R and run the following. it seems that biocLite does not accept "path" and only accepts the package name. thanks though, weiwei On 9/22/06, Sean Davis <sdavis2 at="" mail.nih.gov=""> wrote: > On Friday 22 September 2006 15:01, Weiwei Shi wrote: > > hi, > > I tried to install made4 package from > > http://www.bioconductor.org/packages/1.8/bioc/html/made4.html > > Does: > > biocLite('made4') > > work? > > Sean > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > -- Weiwei Shi, Ph.D Research Scientist GeneGO, Inc. "Did you always know?" "No, I did not. But I believed..." ---Matrix III
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On Friday 22 September 2006 16:45, Weiwei Shi wrote: > Actually, i need to copy that package.tar.gz into the current working > directory of R and run the following. > > it seems that biocLite does not accept "path" and only accepts the package > name. BiocLite downloads the package for you. There is no need to get the .tar.gz file at all. And, yes, it takes a package name. Sean
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