Custom arrays
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Ho, Anne ▴ 10
@ho-anne-1903
Last seen 9.6 years ago
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@james-w-macdonald-5106
Last seen 13 hours ago
United States
Ho, Anne wrote: > Hi > > We are working with affy custom arrays. I am trying to create a new > package for my custom array. > > I was able to create the package using this function: > >>make.cdf.package("RM-hu0.cdf", species = 'homo_sapiens') > > Reading CDF file. > Creating CDF environment > Wait for about 437 > dots................................................................ .... > .................................................................... .... > .................................................................... .... > .................................................................... .... > .................................................................... .... > .................................................................... .... > .................... > Creating package in C:/Documents and Settings/Hoa/Desktop/New > Folder/rmhu01aa520485cdf > [1] "rmhu0cdf" > > > But I get an error message when I try to install it. > 2. >C:/PROGRA~1/R/R-2.3.1/bin/RCMD INSTALL rmhu0cdf > > 'make' is not recognized as an internal or external command, > operable program or batch file. > *** Installation of rmhu0cdf failed *** > > What should I do? I am using windows XP. You have two choices. First, you could use make.cdf.env(), remembering to name your env 'RM-hu0cdf' (I think that is correct. if you get an error saying it isn't found, the error will say what it is looking for). Second, you could follow the advice on this page to get set up to build packages: http://cran.fhcrc.org/bin/windows/base/rw-FAQ.html#Can-I-install- packages-into-libraries-in-this-version_003f Best, Jim > > Thanks > Anne > > -------------------------------------------------------------------- ---------- > Notice: This e-mail message, together with any attachments,...{{dropped}} > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- James W. MacDonald, M.S. Biostatistician Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623 ********************************************************** Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues.
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