simpleaffy gives error: unable to find an inherited method for function "pData"
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Dick Beyer ★ 1.4k
@dick-beyer-26
Last seen 9.6 years ago
I've run into an error using simpleaffy on linux. I am running R in a directory that contains several CEL files. library(simpleaffy) > affyRaw <- ReadAffy() Error in function (classes, fdef, mtable) : unable to find an inherited method for function "pData", for signature "phenoData" > sessionInfo() R version 2.4.0 (2006-10-03) x86_64-unknown-linux-gnu locale: LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US .UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US. UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8 ;LC_IDENTIFICATION=C attached base packages: [1] "tools" "methods" "stats" "graphics" "grDevices" "utils" [7] "datasets" "base" other attached packages: simpleaffy affy affyio Biobase "2.2.0" "1.12.0" "1.0.0" "1.12.2" If I redo this without simpleaffy, then all is well. Thanks, Dick ********************************************************************** ********* Richard P. Beyer, Ph.D. University of Washington Tel.:(206) 616 7378 Env. & Occ. Health Sci. , Box 354695 Fax: (206) 685 4696 4225 Roosevelt Way NE, # 100 Seattle, WA 98105-6099 http://depts.washington.edu/ceeh/ServiceCores/FC5/FC5.html http://staff.washington.edu/~dbeyer
affy simpleaffy affyio affy simpleaffy affyio • 1.0k views
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