>To: Karen Vranizan <vranizan at="" berkeley.edu=""> >From: Naomi Altman <naomi at="" stat.psu.edu=""> >Subject: Re: [BioC] limma - moderated F for one-way anova >Cc: >Bcc: >X-Eudora-Signature: <work> >Date: Thu, 09 Nov 2006 10:58:29 -0500 > >The eBayes output includes F.p.value which is the F-test p >value. However, this is only the usual ANOVA F-test if you have set >up the contrast matrix correctly, with 3 orthogonal contrasts. e.g. >(A-B), (C-D), (A+B-C-D) > >--Naomi > >At 06:14 AM 11/9/2006, you wrote: >>How would one get an overall F test (moderated) and p value for a >>one-way anova with 4 groups? >> >>Karen Vranizan >>Functional Genomics Lab >>261A Life Sciences Addition >>Mail Code #3200 >>UC Berkeley, CA 94720-3200 >> >>Phone: 510-642-7520 >>Fax: 510-643-2685 >>email: vranizan at berkeley.edu >> >> [[alternative HTML version deleted]] >> >>_______________________________________________ >>Bioconductor mailing list >>Bioconductor at stat.math.ethz.ch >>https://stat.ethz.ch/mailman/listinfo/bioconductor >>Search the archives: >>http://news.gmane.org/gmane.science.biology.informatics.conductor > >Naomi S. Altman 814-865-3791 (voice) >Associate Professor >Dept. of Statistics 814-863-7114 (fax) >Penn State University 814-865-1348 (Statistics) >University Park, PA 16802-2111 Naomi S. Altman 814-865-3791 (voice) Associate Professor Dept. of Statistics 814-863-7114 (fax) Penn State University 814-865-1348 (Statistics) University Park, PA 16802-2111