Question: problems with library goCluster
0
gravatar for Caroline Reiff
12.7 years ago by
Caroline Reiff40 wrote:
Hi, I am currently trying to learn about the various GO tool packages in bioconductor following the examples in http://faculty.ucr.edu/~tgirke/Documents/R_BioCond/R_BioCondManual.htm l#biocon_affy. While I had some success with GOstats, GOHyperGAll and goTools, I am having difficulties with goCluster. When I try to load the library via biocLite (see below) I get the following: >source("http://www.bioconductor.org/biocLite.R") >biocLite("goCluster") Running getBioC version 0.1.8 with R version 2.4.0 Running biocinstall version 1.9.9 with R version 2.4.0 Your version of R requires version 1.9 of Bioconductor. dependency ''goCluster'' is not available > can anybody tell me what is going on here? Many thanks Caroline
go gotools gostats gocluster • 420 views
ADD COMMENTlink modified 12.7 years ago by James W. MacDonald51k • written 12.7 years ago by Caroline Reiff40
Answer: problems with library goCluster
0
gravatar for James W. MacDonald
12.7 years ago by
United States
James W. MacDonald51k wrote:
Hi Caroline, Caroline Reiff wrote: > Hi, > I am currently trying to learn about the various GO tool packages in > bioconductor following the examples in > http://faculty.ucr.edu/~tgirke/Documents/R_BioCond/R_BioCondManual.h tml#biocon_affy. > While I had some success with GOstats, GOHyperGAll and goTools, I am > having difficulties with goCluster. When I try to load the library > via biocLite (see below) I get the following: > > > >source("http://www.bioconductor.org/biocLite.R") > >biocLite("goCluster") > Running getBioC version 0.1.8 with R version 2.4.0 > Running biocinstall version 1.9.9 with R version 2.4.0 > Your version of R requires version 1.9 of Bioconductor. > dependency ''goCluster'' is not available > > > > can anybody tell me what is going on here? goCluster is no longer supported by its author, and is no longer part of BioC. Evidently it has been superceded by AMEN: http://www.biozentrum.unibas.ch/primig/amen/ Best, Jim > Many thanks Caroline > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- James W. MacDonald, M.S. Biostatistician Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623 ********************************************************** Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues.
ADD COMMENTlink written 12.7 years ago by James W. MacDonald51k
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