problems with library goCluster
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@caroline-reiff-2015
Last seen 6.8 years ago
Hi, I am currently trying to learn about the various GO tool packages in bioconductor following the examples in http://faculty.ucr.edu/~tgirke/Documents/R_BioCond/R_BioCondManual.htm l#biocon_affy. While I had some success with GOstats, GOHyperGAll and goTools, I am having difficulties with goCluster. When I try to load the library via biocLite (see below) I get the following: >source("http://www.bioconductor.org/biocLite.R") >biocLite("goCluster") Running getBioC version 0.1.8 with R version 2.4.0 Running biocinstall version 1.9.9 with R version 2.4.0 Your version of R requires version 1.9 of Bioconductor. dependency ''goCluster'' is not available > can anybody tell me what is going on here? Many thanks Caroline
GO goTools GOstats goCluster GO goTools GOstats goCluster • 488 views
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@james-w-macdonald-5106
Last seen 55 minutes ago
United States
Hi Caroline, Caroline Reiff wrote: > Hi, > I am currently trying to learn about the various GO tool packages in > bioconductor following the examples in > http://faculty.ucr.edu/~tgirke/Documents/R_BioCond/R_BioCondManual.h tml#biocon_affy. > While I had some success with GOstats, GOHyperGAll and goTools, I am > having difficulties with goCluster. When I try to load the library > via biocLite (see below) I get the following: > > > >source("http://www.bioconductor.org/biocLite.R") > >biocLite("goCluster") > Running getBioC version 0.1.8 with R version 2.4.0 > Running biocinstall version 1.9.9 with R version 2.4.0 > Your version of R requires version 1.9 of Bioconductor. > dependency ''goCluster'' is not available > > > > can anybody tell me what is going on here? goCluster is no longer supported by its author, and is no longer part of BioC. Evidently it has been superceded by AMEN: http://www.biozentrum.unibas.ch/primig/amen/ Best, Jim > Many thanks Caroline > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- James W. MacDonald, M.S. Biostatistician Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623 ********************************************************** Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues.
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