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Question: heatmap without column's dendrogram
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gravatar for Federico Abascal
10.7 years ago by
Federico Abascal90 wrote:
Dear colleagues, I am working with a matrix (like a matrix of gene expression) and I have done a hierarchical clustering of genes, and want to plot it using a heatmap. My problem is that the heatmap reorders also the columns (not only the genes), and I don't want the columns to change their order. How can I solve this problem??? Thanks in advance, Federico
ADD COMMENTlink modified 10.7 years ago by Francois Pepin1.3k • written 10.7 years ago by Federico Abascal90
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gravatar for Francois Pepin
10.7 years ago by
Francois Pepin1.3k
Francois Pepin1.3k wrote:
Hi Federico, You can take a look at the help for the heatmap function with ?heatmap. Colv is the argument you're looking for. Colv=NA will suppress any dendrogram for the columns. Most of the other heatmap functions should have this argument as well. Francois On Thu, 2007-02-15 at 16:05 +0100, Federico Abascal wrote: > Dear colleagues, > > I am working with a matrix (like a matrix of gene expression) and I have > done a hierarchical clustering of genes, and want to plot it using a > heatmap. > > My problem is that the heatmap reorders also the columns (not only the > genes), and I don't want the columns to change their order. > > How can I solve this problem??? > > Thanks in advance, > Federico > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >
ADD COMMENTlink written 10.7 years ago by Francois Pepin1.3k
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