Unable to compile the impute package on debian with gcc 4.1
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Seth Falcon ★ 7.4k
@seth-falcon-992
Last seen 7.0 years ago
Hi Sebastian, Sebastian Bauer <sebastian.bauer at="" charite.de=""> writes: > I'd like to install the "impute" package on my 64bit debian system. > So it seems that the installed gfortan isn't able to deal with the > source. I have no experiences with the Fortan language so I can't tell > if there is indeed something wrong with the sources or if it is merely > my installation. More specific, I'm using the 4.1 series of the GNU > compiler tools. Are there issues know with this particular compiler > suite associated with the impute package? Any solutions to work around > the problem? Any hints are highly appreciated. We are seeing the same issues on our build systems. This is almost certainly due to gfortran being more strict than g77. I have sent the impute package maintainer an email asking that he take a look. + seth -- Seth Falcon | Computational Biology | Fred Hutchinson Cancer Research Center http://bioconductor.org
Cancer impute Cancer impute • 582 views
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Seth Falcon ★ 7.4k
@seth-falcon-992
Last seen 7.0 years ago
Sebastian Bauer <sebastian.bauer at="" charite.de=""> writes: > Hi Seth, > > Seth Falcon wrote: >> We are seeing the same issues on our build systems. This is almost >> certainly due to gfortran being more strict than g77. > > Yes, you're right. When compiling the file manually with g77 it runs > through. Is there any possibility to alter R to take g77 instead the > gfortran compiler? Well, yes. But I suspect you would want all of R to be using same fortran and that the way to do it is to rebuild R from source setting a config option. The R Admin manual might have some useful details. Before you recompile, I suppose it wouldn't hurt to edit R's Makeconf file located in R_HOME/etc/Makeconf. >> I have sent the impute package maintainer an email asking that he take >> a look. And I've heard back that he has a patch that should be applied this week. + seth -- Seth Falcon | Computational Biology | Fred Hutchinson Cancer Research Center http://bioconductor.org
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@sebastian-bauer-2067
Last seen 7.0 years ago
Hi Seth, Seth Falcon wrote: > We are seeing the same issues on our build systems. This is almost > certainly due to gfortran being more strict than g77. Yes, you're right. When compiling the file manually with g77 it runs through. Is there any possibility to alter R to take g77 instead the gfortran compiler? > I have sent the impute package maintainer an email asking that he take > a look. Thanks as well. Ciao, Sebastian
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On Mar 7, 2007, at 2:54 AM, Sebastian Bauer wrote: > Hi Seth, > > Seth Falcon wrote: >> We are seeing the same issues on our build systems. This is almost >> certainly due to gfortran being more strict than g77. > > Yes, you're right. When compiling the file manually with g77 it runs > through. Is there any possibility to alter R to take g77 instead the > gfortran compiler? No, gfortran is required for universal binaries (since gfortran is the one that fits in with GCC4) Kasper > >> I have sent the impute package maintainer an email asking that he >> take >> a look. > > Thanks as well. > > Ciao, > Sebastian > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/ > gmane.science.biology.informatics.conductor
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