I have a simple question on using biomaRt but I did not find a proper
manual to follow.
I have a list of probes with affy ids and I want to convert them into
entrezgene id. Is there a manual or example I can follow?
Weiwei Shi, Ph.D
"Did you always know?"
"No, I did not. But I believed..."
As most Bioconductor packages, biomaRt comes with a vignette
(actually 2). Read it :)
To do so, you can do one of several steps
will give you a list of vignettes on your system, alternatively you
R> vignette(package = "biomaRt")
will open one.
Use Biobase vignette browser:
This differs from vignette in
* Only vignettes from loaded packages are shown (so you need to do R>
* You get a selection menu
Download it from the package webpage on www.bioconductor.org
On Mar 28, 2007, at 9:06 PM, Weiwei Shi wrote:
> I have a simple question on using biomaRt but I did not find a
> manual to follow.
> I have a list of probes with affy ids and I want to convert them
> entrezgene id. Is there a manual or example I can follow?
> Weiwei Shi, Ph.D
> Research Scientist
> GeneGO, Inc.
> "Did you always know?"
> "No, I did not. But I believed..."
> ---Matrix III
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
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