mapGeneInfo (from marray) could not find function "widgetRender"
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@jay-konieczka-1983
Last seen 9.6 years ago
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Seth Falcon ★ 7.4k
@seth-falcon-992
Last seen 9.6 years ago
Hi Jay, Jay Konieczka <jayk at="" u.arizona.edu=""> writes: > Hi, > > I couldn't find anything in the archives so I apologize if it was > there and I missed it. When I try to run mapGeneInfo with the widget > I get the following error: > > map = mapGeneInfo(widget=TRUE, mraw at maGnames) > [1] "widget" > Error in widget.mapGeneInfo(Gnames) : could not find function > "widgetRender" > > I'm running R 2.4.1 on a Mac OS X (10.4.9). I have the latest > version of Bioconductor and tkWidgets version 1.12.1 THe widgetRender function is defined in tkWidgets but not currently exported in the NAMESPACE. Nothing has changed there recently, so this may have been a problem for awhile. The widget functionality has other issues even once the widgetRender function is found. I've cc'd the maintainers of both tkWidgets and marray in hopes they can take a look and provide additional information. Best, + seth -- Seth Falcon | Computational Biology | Fred Hutchinson Cancer Research Center http://bioconductor.org
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Hi Jay, There are two ways of using the mapGeneInfo function: command line and widget. I will discuss with John off-list what is the best way to get the widget component working for mapGeneInfo. But for the moment, if you like to creat the mapping, you can write a simple one line command: For example, in your mraw at Gnames@maInfo, if you have the following columns: "ProbeID", "ProbeName" where "ProbeID" have accession number. Than you can running the following line to enable a html link to the Source web site later on when using the function htmlPage. mapGeneInfo(ProbeID="SMDacc") Please e-mail me if you like more help setting the mapping up. Cheers Jean On Thu, 5 Apr 2007, Seth Falcon wrote: > Hi Jay, > > Jay Konieczka <jayk at="" u.arizona.edu=""> writes: >> Hi, >> >> I couldn't find anything in the archives so I apologize if it was >> there and I missed it. When I try to run mapGeneInfo with the widget >> I get the following error: >> > map = mapGeneInfo(widget=TRUE, mraw at maGnames) >> [1] "widget" >> Error in widget.mapGeneInfo(Gnames) : could not find function >> "widgetRender" >> >> I'm running R 2.4.1 on a Mac OS X (10.4.9). I have the latest >> version of Bioconductor and tkWidgets version 1.12.1 > > THe widgetRender function is defined in tkWidgets but not currently > exported in the NAMESPACE. Nothing has changed there recently, so > this may have been a problem for awhile. > > The widget functionality has other issues even once the > widgetRender function is found. I've cc'd the maintainers of both > tkWidgets and marray in hopes they can take a look and provide > additional information. > > Best, > > + seth > > -- > Seth Falcon | Computational Biology | Fred Hutchinson Cancer Research Center > http://bioconductor.org >
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