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Hi Dhruv, You probably want to take a look at the oligo package (http://bioconductor.org/packages/2.0/bioc/html/oligo.html), which reads NimbleGen XYS and NDF files. That will get your data into some standard data objects and you can go from there. Regards, Todd dhruv pant wrote: > Hi, > I had a question regarding reading Nimblegen chip data ('FTR' files, > probably the equivalent of CEL files) > and doing model fitting etc (fitPLM) in R. > For Affy chips, to do this, one needs the CDF files for the chip and the > CEL files for further analysis. > > Can something similar be done with the Nimblegen data (given the FTR files > and the NDF file) for analysis? > > > Thanks > Dhruv > -- Todd Richmond, PhD Manager of Research Informatics NimbleGen Systems, Inc Madison, WI 53719 1-608-218-7600