error in annaffy
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@mayte-suarez-farinas-2068
Last seen 7.4 years ago
United States
Hi, I got an error in annaffy function that I use a lot. I installed R 2.5 and all BioC package but still got the same error anntable <- aafTableAnn(probesids, "hgu133a2", anncols) Warning message: This environment never contains any data, and will be removed in the next release. Any Idea about what is going on ??
annaffy annaffy • 547 views
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@james-w-macdonald-5106
Last seen 2 hours ago
United States
Hi Mayte, Mayte Suarez-Farinas wrote: > Hi, I got an error in annaffy function that I use a lot. > I installed R 2.5 and all BioC package but still got the same error > > anntable <- aafTableAnn(probesids, "hgu133a2", anncols) > Warning message: > This environment never contains any data, and will be removed in the > next release. > > Any Idea about what is going on ?? First, that is _not_ an error, but a warning. There is a big difference. Anyway, the warning comes from the hgu133a2SUMFUNC environment: > get(probids[1], hgu133a2SUMFUNC) [1] NA Warning message: This environment never contains any data, and will be removed in the next release. Which pretty much sums it all up, yes? Best, Jim > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- James W. MacDonald, M.S. Biostatistician Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623 ********************************************************** Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues.
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