exon array QC
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Liu, Xin ▴ 10
@liu-xin-2148
Last seen 9.6 years ago
Dear all, I am working on the exon array data analysis, and got two questions here 1) Affymetrix does not recommend the thredhold for the QC parameters, such as on the gene level analysis, pm-mean, bgrd-mean, pos_vs_neg_auc, all Probe-residual, and positive control residual. Does anybody has some experience or recommendation? 2) Is there any other bioconductor package except "exonmap"? Thanks Xin Proprietary or confidential information belonging to Almac Group Limited or to one of its affiliated companies may be contained in this message. The e-mail and any files transmitted with it are confidential and privileged and intended solely for the use of the individual or entity to whom they are addressed. Any unauthorised direct or indirect dissemination, distribution or copying of this message and any attachments is strictly prohibited. If you have received the e-mail in error please notify helpdesk at almacgroup.com and delete the e-mail from your system. E-mail and other communications sent to this company may be reviewed or read by persons other than the intended recipient. Viruses : although we have taken steps to ensure that this e-mail and any attachments are free from any virus, you should, in keeping with good practice, ensure that they are actually virus free.
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