Question: bug with AnnBuilder and parser
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gravatar for gregory voisin
12.3 years ago by
Canada
gregory voisin430 wrote:
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ADD COMMENTlink modified 12.3 years ago by Nianhua Li870 • written 12.3 years ago by gregory voisin430
Answer: bug with AnnBuilder and parser
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gravatar for Nianhua Li
12.3 years ago by
Nianhua Li870
Nianhua Li870 wrote:
Hi, Gregory, Could you try invoking ABPkgBuilder directly? Here is a sample script (taken from your email) for example: library (AnnBuilder) data_gb = read.table("probeset_gb.txt" , sep = "\t", header=FALSE, as.is=TRUE) mybase = file.path("probeset_gb.txt") mybasetype= "gb" mydir = getwd() ABPkgBuilder(baseName= mybase, baseMapType = mybasetype, pkgName = "monPackageAnnoted", pkgPath = mydir, organism = "Homo sapiens", version = "1.0.0", author = list (authors = "Greg_Voisin, Amelie Ouellet", maintainer = "voisingreg at ...") ) You have to modify the maintainer email since it is marked by gmane. If it still doesn't work, please write back with the output of "sessionInfo()". thanks nianhua
ADD COMMENTlink written 12.3 years ago by Nianhua Li870
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