Error Installation for Genefilter
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@lisa-devereaux-346
Last seen 9.6 years ago
Hello, I am new to bioconductor and am having difficulty in loading Affymetrix data. There appears to be a problem in loading/installing genefilter (as per the extract below). Can anyone help me in order to fix this problem? Thank you Lisa > library(affy) Error in checkPkgDeps(pkgname) : You can not load package Biobase as it requires you to have package genefilter which is not currently installed. Error in checkPkgDeps(pkgname) : You can not load package Biobase as it requires you to have package genefilter which is not currently installed. Error in getClass(Class) : "MIAME" is not a defined class Error in library(affy) : .First.lib failed > local({a<- CRAN.packages(CRAN=getOption("BIOC")) + install.packages(select.list(a[,1],,TRUE), .libPaths()[1], available=a, CRAN=getOption("BIOC"))}) trying URL `http://www.bioconductor.org/bin/windows/contrib/1.7/PACKAGES' Content type `text/plain' length 11255 bytes opened URL downloaded 10Kb trying URL `http://www.bioconductor.org/bin/windows/contrib/1.7/genefilter_1.0.5. zi p' Content type `application/zip' length 524 bytes opened URL downloaded 524 bytes Error in file(file, "r") : unable to open connection In addition: Warning message: cannot open file `genefilter/DESCRIPTION' Lisa Devereaux B.App Sci (Hons) Biotechnician GENETRAKS PTY LTD Email: <mailto:lisa.d@genetraks.com> lisa.d@genetraks.com Website: <http: www.genetraks.com=""/> www.genetraks.com Level 1, 80 Jephson Street PO Box 2060 Toowong QLD 4006 Australia Tel: 61 7 3327 9822 Fax: 61 7 3719 5499 Confidentiality: The contents of this email are confidential and are intended only for the named recipient. If the reader of this e-mail is not the intended recipient you are hereby notified that any use, reproduction, disclosure or distribution of the information contained in the e-mail is prohibited. If you have received this e-mail in error, please reply to us immediately and delete the document and any attachments. [[alternate HTML version deleted]]
Biobase genefilter Biobase genefilter • 844 views
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