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Hi Di -- "Di Wu" <di.wu at="" med.monash.edu.au=""> writes: > Dear list, > > I am using BrainArray CDF in my microarray data analysis. I am interested to > look at the GO information from my top list. But it has no this information. > So I am using AnnBuilder to build my mm430mmRS package with GO and other > information. I successfully build the package as a folfer "mm430mmRS". There > are 3 folders inside: data, man, R. And two files: DESCRIPTION and > NAMESPACE. > > Here is my code: > > library(AnnBuilder) > read.table(file.path(.path.package("AnnBuilder"), "data", > "mm430mmrefseq_ID"), > sep = "\t", header = FALSE, as.is = TRUE)[100:115, ] > > myBase <- file.path(.path.package("AnnBuilder"), "data", "mm430mmrefseq_ID") > myBaseType <- "refseq" > mySrcUrls <- getSrcUrl("all", "Mus musculus") > mySrcUrls > > myDir <- c("C:\\Documents and Settings\\dwu\\My Documents\\Di PhD\\R") > > ABPkgBuilder(baseName = myBase, srcUrls = mySrcUrls, baseMapType = > myBaseType, pkgName = "mm430mmRS", > pkgPath = myDir, organism = "Mus musculus", version = "2.5.0", > author = list(authors = "Di Wu", maintainer = > "myname at myemail."), fromWeb = TRUE) > > I zipped the fold and install it. It looks fine, listed in the library > available. Did you cd C:\\Documents and Settings\\dwu\\My Documents\\Di PhD\\R R CMD INSTALL mm430mmRS ? Although the files end with '.zip', they are processed before being zipped. Additional tools are needed to use R CMD INSTALL, see http://cran.r-project.org/bin/windows/base/rw-FAQ.html#Packages where the instructions have to be followed carefully; a good good idea is to make sure your toolchain works by trying to download the source version of an existing annotation package, and installing that with R CMD INSTALL. Hope that helps, Martin > Then, I wanted to load it by library(mm430mmRS) > > The error is: > Error in library(package, lib.loc = lib.loc, character.only = TRUE, logical > = TRUE, : > 'mm430mmRS' is not a valid package -- installed < 2.0.0? > > > I tried make "version=1.1.0". It does not solve it . I don't know if that's > the problem. > > But I am thinking maybe there are some other ways to load the packages > generated by AnnBuilder to avoid the error since my package do es not have > the full contents as normal packages, such as "meta" package. > > Please give me some opinions. Thanks in advance. > > Di > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Martin Morgan Bioconductor / Computational Biology http://bioconductor.org