Question: Using current GO data with Bioconductor
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gravatar for peter robinson
12.4 years ago by
peter robinson300 wrote:
Dear Bioconductors, we are in the process of testing new routines for GO analysis and would like to use the same version of the gene_ontology.obo file for the Bioconductor routines as well as other software. Is there any way of importing a current version of this data into Bioconductor so it can be used with the other packages? Thanks, Peter
go process • 385 views
ADD COMMENTlink modified 12.4 years ago by Marc Carlson7.2k • written 12.4 years ago by peter robinson300
Answer: Using current GO data with Bioconductor
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gravatar for Marc Carlson
12.4 years ago by
Marc Carlson7.2k
United States
Marc Carlson7.2k wrote:
I believe that I have located the source files for gene_ontology.obo that go with the last release of BioConductor. This would provide you with a matching set of source and package for GO. If you are planning on changing code that looks at GO, then I suspect this will do the trick for you. Please reply to my off list email if you would like the source file we used and I will send it on. Marc Peter Robinson wrote: > Dear Bioconductors, > > we are in the process of testing new routines for GO analysis and would like to use the same version of the gene_ontology.obo file for the Bioconductor routines as well as other software. Is there any way of importing a current version of this data into Bioconductor so it can be used with the other packages? > > Thanks, Peter > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > > >
ADD COMMENTlink written 12.4 years ago by Marc Carlson7.2k
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