Hello I was reading the guidelines at the bioconductor developer page. But how about naming functions? There is a part for "variable names" and the hint for using namespaces. In several packages I found functions of the kind: "just.rma" Is using the "dot" in a function name permitted and has the "dot" any meaning? Thanks Markus -- Dipl.-Tech. Math. Markus Schmidberger Ludwig-Maximilians-Universit?t M?nchen IBE - Institut f?r medizinische Informationsverarbeitung, Biometrie und Epidemiologie Marchioninistr. 15, D-81377 Muenchen URL: http://ibe.web.med.uni-muenchen.de Mail: Markus.Schmidberger [at] ibe.med.uni-muenchen.de

Hi Markus -- Sometimes we're stuck with what went before, for better or worse. A '.' in a function name _does_ have a special meaning (in the 'S3' object system, section 10.9 of 'An Introduction To R', for detail). Unfortunately, the dot in just.rma is not being used in that way, and the Bioconductor project emphasizes the S4 rather than S3 object system. With hindsight a better name would have been along the lines of justRma. A dot in the function name only causes confusion, and should be avoided. Questions like this might be better on the Bioc-devel list, though they're welcome anywhere! Martin Markus Schmidberger <schmidb at="" ibe.med.uni-muenchen.de=""> writes: > Hello > > I was reading the guidelines at the bioconductor developer page. But how > about naming functions? > There is a part for "variable names" and the hint for using namespaces. > In several packages I found functions of the kind: "just.rma" > Is using the "dot" in a function name permitted and has the "dot" any > meaning? > > Thanks > Markus > > -- > Dipl.-Tech. Math. Markus Schmidberger > > Ludwig-Maximilians-Universit?t M?nchen > IBE - Institut f?r medizinische Informationsverarbeitung, > Biometrie und Epidemiologie > Marchioninistr. 15, D-81377 Muenchen > URL: http://ibe.web.med.uni-muenchen.de > Mail: Markus.Schmidberger [at] ibe.med.uni-muenchen.de > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Martin Morgan Bioconductor / Computational Biology http://bioconductor.org