Search
Question: Does anyone have the same problem with new("ExpressionSet", ...) ?
0
gravatar for Wolfgang Huber
11.1 years ago by
EMBL European Molecular Biology Laboratory
Wolfgang Huber13k wrote:
... this seems to have crept in recently. my first guess would be it has to do with either Biobase or methods; for example: library("affydata") data("Dilution") options(error=recover) rma(Dilution) Background correcting Normalizing Calculating Expression Error in .nextMethod(e1, e2) : comparison of these types is not implemented Enter a frame number, or 0 to exit 1: source("test.R") 2: eval.with.vis(ei, envir) 3: eval.with.vis(expr, envir, enclos) 4: rma(Dilution) 5: new("ExpressionSet", phenoData = phenoData(object), annotation = annotation 6: initialize(value, ...) 7: initialize(value, ...) 8: .local(.Object, ...) 9: callNextMethod(.Object, phenoData = phenoData, featureData = featureData, e 10: eval(call, callEnv) 11: eval(expr, envir, enclos) 12: .nextMethod(.Object, phenoData = phenoData, featureData = featureData, expe 13: .local(.Object, ...) 14: callNextMethod(.Object, assayData = assayData, phenoData = phenoData, featu 15: eval(call, callEnv) 16: eval(expr, envir, enclos) 17: .nextMethod(.Object, assayData = assayData, phenoData = phenoData, featureD 18: .local(.Object, ...) 19: callNextMethod(.Object, ...) 20: eval(call, callEnv) 21: eval(expr, envir, enclos) 22: .nextMethod(.Object, ...) 23: validObject(.Object) 24: anyStrings(validityMethod(as(object, superClass))) 25: identical(x, TRUE) 26: validityMethod(as(object, superClass)) 27: validMsg(NULL, isValidVersion(object, "eSet")) 28: isValidVersion(object, "eSet") 29: isCurrent(object) 30: isCurrent(object) 31: isCurrent(object, class(object)) 32: isCurrent(object, class(object)) 33: classVersion(object)[names(vers)] == vers 34: classVersion(object)[names(vers)] == vers 35: callNextMethod(e1, e2) 36: eval(call, callEnv) 37: eval(expr, envir, enclos) Selezione: > sessionInfo() R version 2.6.0 Under development (unstable) (2007-09-04 r42759) x86_64-unknown-linux-gnu locale: LC_CTYPE=it_IT.UTF-8;LC_NUMERIC=C;LC_TIME=it_IT.UTF-8;LC_COLLATE=it_IT .UTF-8;LC_MONETARY=it_IT.UTF-8;LC_MESSAGES=it_IT.UTF-8;LC_PAPER=it_IT. UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=it_IT.UTF-8 ;LC_IDENTIFICATION=C attached base packages: [1] tools stats graphics grDevices utils datasets methods [8] base other attached packages: [1] hgu95av2cdf_1.17.0 affydata_1.11.2 affy_1.15.7 [4] preprocessCore_0.99.12 affyio_1.5.8 Biobase_1.15.30 [7] fortunes_1.3-3 Best wishes Wolfgang ------------------------------------------------------------------ Wolfgang Huber EBI/EMBL Cambridge UK http://www.ebi.ac.uk/huber
ADD COMMENTlink written 11.1 years ago by Wolfgang Huber13k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 367 users visited in the last hour