hgu95a probe co-ordinates in May 2004 assembly
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Janet Young ▴ 740
@janet-young-2360
Last seen 4.5 years ago
Fred Hutchinson Cancer Research Center,…
Hi, I'm trying to find chromosomal co-ordinates for the hgu95a array probes in the May 2004 version of the human genome assembly (also known as hg17, and build 35). It looks like the co-ordinates in the bioconductor package refer to the July 2003 (= hg16, build34) assembly (is that right?), and I can get co-ordinates from the Affy website on the March 2006 (=hg18, build 36.1) assembly. I can think of various complicated and imperfect ways to rederive the co-ordinates for the May 2004 assembly, but it seems to me the mapping I want is probably out there somewhere already. Any ideas? thanks in advance, Janet Young ------------------------------------------------------------------- Dr. Janet Young Trask lab Fred Hutchinson Cancer Research Center 1100 Fairview Avenue N., C3-168, P.O. Box 19024, Seattle, WA 98109-1024, USA. tel: (206) 667 1471 fax: (206) 667 6524 http://www.fhcrc.org/labs/trask/
Cancer hgu95a affy Cancer hgu95a affy • 578 views
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