Building Rgraphviz w/ Graphviz 2.14
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@emil-lundberg-2389
Last seen 7.4 years ago
Hi all, I have trouble installing/compiling Rgraphviz 1.14.1 for BioC 2.0. I'm on Mac OS X 10.4.1 server (Intel). This thread started on the MacPorts mailing list (providers of the Graphviz package for OS X), then took a side tour to the Graphviz developers, but I now believe it belongs here. Response from macports-users: http://lists.macosforge.org/pipermail/ macports-users/2007-September/005630.html Response from graphviz-devel: https://mailman.research.att.com/ pipermail/graphviz-devel/2007/000450.html The root of the problem is that graphviz >=2.14 is missing some header files as compared to older versions. I assume this is due to the cleanup of the code rather than missing functionality, but in any case, a revision of the Rgraphviz package is probably in order. Until an Rgraphviz update hits the trunk, do you have any tips on how I can get the current Rgraphviz to compile manually? Or dare I try the OS X binary? Se below for compilation specifics. TIA, Emil Lundberg MicroArray Datawarehouse Resource (MADR) Linnaeus Centre for Bioinformatics (LCB) Biomedical Centre (BMC) Uppsala University ********** (manually in the Rgraphviz directory, or through bioclite("Rgraphviz")) % R CMD INSTALL . * Installing to library '/opt/local/lib/R/library' * Installing *source* package 'Rgraphviz' ... configure: No --with-graphviz option was specified. Trying to find graphviz using other methods. checking for pkg-config... /opt/local/bin/pkg-config configure: Found graphviz 2.14.1 configure: We have inferred the following flags for graphviz configure: ..PKG_CPPFLAGS=-I/opt/local/include/graphviz configure: ..PKG_LIBS=-L/opt/local/lib -lgvc configure: creating ./config.status config.status: creating src/Makevars ** libs /opt/local/bin/gcc-mp-4.2 -std=gnu99 -I/opt/local/lib/R/include -I/ opt/local/lib/R/include -I/opt/local/include/graphviz - DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=14 -I/opt/local/include - D__NO_MATH_INLINES -fPIC -O2 -c LL_funcs.c -o LL_funcs.o In file included from /opt/local/include/graphviz/gvc.h:20, from common.h:30, from LL_funcs.c:1: /opt/local/include/graphviz/types.h:27:1: warning: "TRUE" redefined In file included from common.h:5, from LL_funcs.c:1: /opt/local/lib/R/include/Rdefines.h:148:1: warning: this is the location of the previous definition In file included from LL_funcs.c:1: common.h:41:20: error: gvcint.h: No such file or directory common.h:42:21: error: globals.h: No such file or directory make: *** [LL_funcs.o] Error 1 chmod: /opt/local/lib/R/library/Rgraphviz/libs/*: No such file or directory ERROR: compilation failed for package 'Rgraphviz' ** Removing '/opt/local/lib/R/library/Rgraphviz' I've already tried removing the gvcint.h and globals.h includes from common.h, but I then get: [...] graphvizVersion.c: In function 'Rgraphviz_graphvizVersion': graphvizVersion.c:24: error: dereferencing pointer to incomplete type ********** Thanks guys for adressing this. My graphviz (2.14-1 from MacPorts) is missing the following headers compared to Ryan's 2.12: aghdr.h agxbuf.h arith.h (back as of 2.14-3) ast_common.h dthdr.h exgram.h exlib.h expr.h globals.h (requested by Rgraphviz) grammar.h gvcint.h (requested by Rgraphviz) libgraph.h logic.h malloc.h parser.h pathplan.h pathutil.h solvers.h tri.h triefa.h vis.h vispath.h vmstub.h To clarify matters, the Rgraphviz is an external R package that depends on the Bioconductor package, so the R developers might not know about it. R builds fine using the current MacPorts version (don't know about the devel), and so does Bioconductor, but neither depend on graphviz as such. The maintainers of Rgraphviz have already made a good effort in that package's header files to accomodate different versions of graphviz (up to 2.10 at least), so this is hopefully what they need to know to update the Rgraphviz package. I'm forwarding this to the bioconductor mailing list. best, /Emil
Rgraphviz Rgraphviz • 874 views
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rgentleman ★ 5.5k
@rgentleman-7725
Last seen 6.7 years ago
United States
Hi, Since graphviz 2.14.x came out after BioC 2.0, it is not compatible, and since we are less than one month from a release, we probably will not back port anything. Everything works well on the devel arm (R 2.6.0 alpha/beta and BioC 2.1) best wishes Robert Emil Lundberg wrote: > Hi all, > > I have trouble installing/compiling Rgraphviz 1.14.1 for BioC 2.0. > I'm on Mac OS X 10.4.1 server (Intel). This thread started on the > MacPorts mailing list (providers of the Graphviz package for OS X), > then took a side tour to the Graphviz developers, but I now believe > it belongs here. > > Response from macports-users: http://lists.macosforge.org/pipermail/ > macports-users/2007-September/005630.html > Response from graphviz-devel: https://mailman.research.att.com/ > pipermail/graphviz-devel/2007/000450.html > > The root of the problem is that graphviz >=2.14 is missing some > header files as compared to older versions. I assume this is due to > the cleanup of the code rather than missing functionality, but in any > case, a revision of the Rgraphviz package is probably in order. > > Until an Rgraphviz update hits the trunk, do you have any tips on how > I can get the current Rgraphviz to compile manually? Or dare I try > the OS X binary? Se below for compilation specifics. > > TIA, > > Emil Lundberg > MicroArray Datawarehouse Resource (MADR) > Linnaeus Centre for Bioinformatics (LCB) > Biomedical Centre (BMC) > Uppsala University > > > ********** > (manually in the Rgraphviz directory, or through bioclite("Rgraphviz")) > % R CMD INSTALL . > * Installing to library '/opt/local/lib/R/library' > * Installing *source* package 'Rgraphviz' ... > configure: No --with-graphviz option was specified. Trying to find > graphviz using other methods. > checking for pkg-config... /opt/local/bin/pkg-config > configure: Found graphviz 2.14.1 > configure: We have inferred the following flags for graphviz > configure: ..PKG_CPPFLAGS=-I/opt/local/include/graphviz > configure: ..PKG_LIBS=-L/opt/local/lib -lgvc > configure: creating ./config.status > config.status: creating src/Makevars > ** libs > /opt/local/bin/gcc-mp-4.2 -std=gnu99 -I/opt/local/lib/R/include -I/ > opt/local/lib/R/include -I/opt/local/include/graphviz - > DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=14 -I/opt/local/include - > D__NO_MATH_INLINES -fPIC -O2 -c LL_funcs.c -o LL_funcs.o > In file included from /opt/local/include/graphviz/gvc.h:20, > from common.h:30, > from LL_funcs.c:1: > /opt/local/include/graphviz/types.h:27:1: warning: "TRUE" redefined > In file included from common.h:5, > from LL_funcs.c:1: > /opt/local/lib/R/include/Rdefines.h:148:1: warning: this is the > location of the previous definition > In file included from LL_funcs.c:1: > common.h:41:20: error: gvcint.h: No such file or directory > common.h:42:21: error: globals.h: No such file or directory > make: *** [LL_funcs.o] Error 1 > chmod: /opt/local/lib/R/library/Rgraphviz/libs/*: No such file or > directory > ERROR: compilation failed for package 'Rgraphviz' > ** Removing '/opt/local/lib/R/library/Rgraphviz' > > I've already tried removing the gvcint.h and globals.h includes from > common.h, but I then get: > > [...] > graphvizVersion.c: In function 'Rgraphviz_graphvizVersion': > graphvizVersion.c:24: error: dereferencing pointer to incomplete type > > > ********** > > Thanks guys for adressing this. My graphviz (2.14-1 from MacPorts) is > missing the following headers compared to Ryan's 2.12: > > aghdr.h > agxbuf.h > arith.h (back as of 2.14-3) > ast_common.h > dthdr.h > exgram.h > exlib.h > expr.h > globals.h (requested by Rgraphviz) > grammar.h > gvcint.h (requested by Rgraphviz) > libgraph.h > logic.h > malloc.h > parser.h > pathplan.h > pathutil.h > solvers.h > tri.h > triefa.h > vis.h > vispath.h > vmstub.h > > To clarify matters, the Rgraphviz is an external R package that > depends on the Bioconductor package, so the R developers might not > know about it. R builds fine using the current MacPorts version > (don't know about the devel), and so does Bioconductor, but neither > depend on graphviz as such. > > The maintainers of Rgraphviz have already made a good effort in that > package's header files to accomodate different versions of graphviz > (up to 2.10 at least), so this is hopefully what they need to know to > update the Rgraphviz package. I'm forwarding this to the bioconductor > mailing list. > > > best, > > /Emil > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > -- Robert Gentleman, PhD Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 PO Box 19024 Seattle, Washington 98109-1024 206-667-7700 rgentlem at fhcrc.org
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@lilongisb-sibch-1725
Last seen 7.4 years ago
This is done already for Rgraphviz. If you get latest codes, either from svn, source code download (1.15.9) or the upcoming official release in the beginning of Oct, you should be able to get it run with graphviz 2.14. The nightly build on Mac OS X (10.4.10) is all OK. Li > Hi all, > > I have trouble installing/compiling Rgraphviz 1.14.1 for BioC 2.0. > I'm on Mac OS X 10.4.1 server (Intel). This thread started on the > MacPorts mailing list (providers of the Graphviz package for OS X), > then took a side tour to the Graphviz developers, but I now believe > it belongs here. > > Response from macports-users: http://lists.macosforge.org/pipermail/ > macports-users/2007-September/005630.html > Response from graphviz-devel: https://mailman.research.att.com/ > pipermail/graphviz-devel/2007/000450.html > > The root of the problem is that graphviz >=2.14 is missing some > header files as compared to older versions. I assume this is due to > the cleanup of the code rather than missing functionality, but in any > case, a revision of the Rgraphviz package is probably in order. > > Until an Rgraphviz update hits the trunk, do you have any tips on how > I can get the current Rgraphviz to compile manually? Or dare I try > the OS X binary? Se below for compilation specifics. > > TIA, > > Emil Lundberg > MicroArray Datawarehouse Resource (MADR) > Linnaeus Centre for Bioinformatics (LCB) > Biomedical Centre (BMC) > Uppsala University > > > ********** > (manually in the Rgraphviz directory, or through bioclite("Rgraphviz")) > % R CMD INSTALL . > * Installing to library '/opt/local/lib/R/library' > * Installing *source* package 'Rgraphviz' ... > configure: No --with-graphviz option was specified. Trying to find > graphviz using other methods. > checking for pkg-config... /opt/local/bin/pkg-config > configure: Found graphviz 2.14.1 > configure: We have inferred the following flags for graphviz > configure: ..PKG_CPPFLAGS=-I/opt/local/include/graphviz > configure: ..PKG_LIBS=-L/opt/local/lib -lgvc > configure: creating ./config.status > config.status: creating src/Makevars > ** libs > /opt/local/bin/gcc-mp-4.2 -std=gnu99 -I/opt/local/lib/R/include -I/ > opt/local/lib/R/include -I/opt/local/include/graphviz - > DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=14 -I/opt/local/include - > D__NO_MATH_INLINES -fPIC -O2 -c LL_funcs.c -o LL_funcs.o > In file included from /opt/local/include/graphviz/gvc.h:20, > from common.h:30, > from LL_funcs.c:1: > /opt/local/include/graphviz/types.h:27:1: warning: "TRUE" redefined > In file included from common.h:5, > from LL_funcs.c:1: > /opt/local/lib/R/include/Rdefines.h:148:1: warning: this is the > location of the previous definition > In file included from LL_funcs.c:1: > common.h:41:20: error: gvcint.h: No such file or directory > common.h:42:21: error: globals.h: No such file or directory > make: *** [LL_funcs.o] Error 1 > chmod: /opt/local/lib/R/library/Rgraphviz/libs/*: No such file or > directory > ERROR: compilation failed for package 'Rgraphviz' > ** Removing '/opt/local/lib/R/library/Rgraphviz' > > I've already tried removing the gvcint.h and globals.h includes from > common.h, but I then get: > > [...] > graphvizVersion.c: In function 'Rgraphviz_graphvizVersion': > graphvizVersion.c:24: error: dereferencing pointer to incomplete type > > > ********** > > Thanks guys for adressing this. My graphviz (2.14-1 from MacPorts) is > missing the following headers compared to Ryan's 2.12: > > aghdr.h > agxbuf.h > arith.h (back as of 2.14-3) > ast_common.h > dthdr.h > exgram.h > exlib.h > expr.h > globals.h (requested by Rgraphviz) > grammar.h > gvcint.h (requested by Rgraphviz) > libgraph.h > logic.h > malloc.h > parser.h > pathplan.h > pathutil.h > solvers.h > tri.h > triefa.h > vis.h > vispath.h > vmstub.h > > To clarify matters, the Rgraphviz is an external R package that > depends on the Bioconductor package, so the R developers might not > know about it. R builds fine using the current MacPorts version > (don't know about the devel), and so does Bioconductor, but neither > depend on graphviz as such. > > The maintainers of Rgraphviz have already made a good effort in that > package's header files to accomodate different versions of graphviz > (up to 2.10 at least), so this is hopefully what they need to know to > update the Rgraphviz package. I'm forwarding this to the bioconductor > mailing list. > > > best, > > /Emil > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor >
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@lilongisb-sibch-1725
Last seen 7.4 years ago
A correction: the nightly build is based on graphviz 2.12. From what I could see in testing with graphviz 2.14, I don't expect major portability issues on Mac OS. If you encounter additional problem with graphviz-2.14 in Rgraphviz 1.15.9, please don't hesitate to let me know. Thanks, Li > > This is done already for Rgraphviz. If you get latest codes, either from > svn, source code download (1.15.9) or the upcoming official release in the > beginning of Oct, you should be able to get it run with graphviz 2.14. > The nightly build on Mac OS X (10.4.10) is all OK. > > Li > >> Hi all, >> >> I have trouble installing/compiling Rgraphviz 1.14.1 for BioC 2.0. >> I'm on Mac OS X 10.4.1 server (Intel). This thread started on the >> MacPorts mailing list (providers of the Graphviz package for OS X), >> then took a side tour to the Graphviz developers, but I now believe >> it belongs here. >> >> Response from macports-users: http://lists.macosforge.org/pipermail/ >> macports-users/2007-September/005630.html >> Response from graphviz-devel: https://mailman.research.att.com/ >> pipermail/graphviz-devel/2007/000450.html >> >> The root of the problem is that graphviz >=2.14 is missing some >> header files as compared to older versions. I assume this is due to >> the cleanup of the code rather than missing functionality, but in any >> case, a revision of the Rgraphviz package is probably in order. >> >> Until an Rgraphviz update hits the trunk, do you have any tips on how >> I can get the current Rgraphviz to compile manually? Or dare I try >> the OS X binary? Se below for compilation specifics. >> >> TIA, >> >> Emil Lundberg >> MicroArray Datawarehouse Resource (MADR) >> Linnaeus Centre for Bioinformatics (LCB) >> Biomedical Centre (BMC) >> Uppsala University >> >> >> ********** >> (manually in the Rgraphviz directory, or through bioclite("Rgraphviz")) >> % R CMD INSTALL . >> * Installing to library '/opt/local/lib/R/library' >> * Installing *source* package 'Rgraphviz' ... >> configure: No --with-graphviz option was specified. Trying to find >> graphviz using other methods. >> checking for pkg-config... /opt/local/bin/pkg-config >> configure: Found graphviz 2.14.1 >> configure: We have inferred the following flags for graphviz >> configure: ..PKG_CPPFLAGS=-I/opt/local/include/graphviz >> configure: ..PKG_LIBS=-L/opt/local/lib -lgvc >> configure: creating ./config.status >> config.status: creating src/Makevars >> ** libs >> /opt/local/bin/gcc-mp-4.2 -std=gnu99 -I/opt/local/lib/R/include -I/ >> opt/local/lib/R/include -I/opt/local/include/graphviz - >> DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=14 -I/opt/local/include - >> D__NO_MATH_INLINES -fPIC -O2 -c LL_funcs.c -o LL_funcs.o >> In file included from /opt/local/include/graphviz/gvc.h:20, >> from common.h:30, >> from LL_funcs.c:1: >> /opt/local/include/graphviz/types.h:27:1: warning: "TRUE" redefined >> In file included from common.h:5, >> from LL_funcs.c:1: >> /opt/local/lib/R/include/Rdefines.h:148:1: warning: this is the >> location of the previous definition >> In file included from LL_funcs.c:1: >> common.h:41:20: error: gvcint.h: No such file or directory >> common.h:42:21: error: globals.h: No such file or directory >> make: *** [LL_funcs.o] Error 1 >> chmod: /opt/local/lib/R/library/Rgraphviz/libs/*: No such file or >> directory >> ERROR: compilation failed for package 'Rgraphviz' >> ** Removing '/opt/local/lib/R/library/Rgraphviz' >> >> I've already tried removing the gvcint.h and globals.h includes from >> common.h, but I then get: >> >> [...] >> graphvizVersion.c: In function 'Rgraphviz_graphvizVersion': >> graphvizVersion.c:24: error: dereferencing pointer to incomplete type >> >> >> ********** >> >> Thanks guys for adressing this. My graphviz (2.14-1 from MacPorts) is >> missing the following headers compared to Ryan's 2.12: >> >> aghdr.h >> agxbuf.h >> arith.h (back as of 2.14-3) >> ast_common.h >> dthdr.h >> exgram.h >> exlib.h >> expr.h >> globals.h (requested by Rgraphviz) >> grammar.h >> gvcint.h (requested by Rgraphviz) >> libgraph.h >> logic.h >> malloc.h >> parser.h >> pathplan.h >> pathutil.h >> solvers.h >> tri.h >> triefa.h >> vis.h >> vispath.h >> vmstub.h >> >> To clarify matters, the Rgraphviz is an external R package that >> depends on the Bioconductor package, so the R developers might not >> know about it. R builds fine using the current MacPorts version >> (don't know about the devel), and so does Bioconductor, but neither >> depend on graphviz as such. >> >> The maintainers of Rgraphviz have already made a good effort in that >> package's header files to accomodate different versions of graphviz >> (up to 2.10 at least), so this is hopefully what they need to know to >> update the Rgraphviz package. I'm forwarding this to the bioconductor >> mailing list. >> >> >> best, >> >> /Emil >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> > >
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Thanks Li and Robert for quick replies. I applied the version- specific fixes to common.h and graphvizVersion.c from 1.15.9 to the 1.14.1 distro, and it compiles/installs nicely against graphviz 2.14-1. I'll let you know if it doesn't work out somehow. /Emil > A correction: the nightly build is based on graphviz 2.12. From > what I > could see in testing with graphviz 2.14, I don't expect major > portability > issues on Mac OS. > > If you encounter additional problem with graphviz-2.14 in Rgraphviz > 1.15.9, please don't hesitate to let me know. > > Thanks, > > Li > >> >> This is done already for Rgraphviz. If you get latest codes, >> either from >> svn, source code download (1.15.9) or the upcoming official >> release in the >> beginning of Oct, you should be able to get it run with graphviz >> 2.14. >> The nightly build on Mac OS X (10.4.10) is all OK. >> >> Li >> >>> Hi all, >>> >>> I have trouble installing/compiling Rgraphviz 1.14.1 for BioC 2.0. >>> I'm on Mac OS X 10.4.1 server (Intel). This thread started on the >>> MacPorts mailing list (providers of the Graphviz package for OS X), >>> then took a side tour to the Graphviz developers, but I now believe >>> it belongs here. >>> >>> Response from macports-users: http://lists.macosforge.org/pipermail/ >>> macports-users/2007-September/005630.html >>> Response from graphviz-devel: https://mailman.research.att.com/ >>> pipermail/graphviz-devel/2007/000450.html >>> >>> The root of the problem is that graphviz >=2.14 is missing some >>> header files as compared to older versions. I assume this is due to >>> the cleanup of the code rather than missing functionality, but in >>> any >>> case, a revision of the Rgraphviz package is probably in order. >>> >>> Until an Rgraphviz update hits the trunk, do you have any tips on >>> how >>> I can get the current Rgraphviz to compile manually? Or dare I try >>> the OS X binary? Se below for compilation specifics. >>> >>> TIA, >>> >>> Emil Lundberg >>> MicroArray Datawarehouse Resource (MADR) >>> Linnaeus Centre for Bioinformatics (LCB) >>> Biomedical Centre (BMC) >>> Uppsala University >>> >>> >>> ********** >>> (manually in the Rgraphviz directory, or through bioclite >>> ("Rgraphviz")) >>> % R CMD INSTALL . >>> * Installing to library '/opt/local/lib/R/library' >>> * Installing *source* package 'Rgraphviz' ... >>> configure: No --with-graphviz option was specified. Trying to find >>> graphviz using other methods. >>> checking for pkg-config... /opt/local/bin/pkg-config >>> configure: Found graphviz 2.14.1 >>> configure: We have inferred the following flags for graphviz >>> configure: ..PKG_CPPFLAGS=-I/opt/local/include/graphviz >>> configure: ..PKG_LIBS=-L/opt/local/lib -lgvc >>> configure: creating ./config.status >>> config.status: creating src/Makevars >>> ** libs >>> /opt/local/bin/gcc-mp-4.2 -std=gnu99 -I/opt/local/lib/R/include -I/ >>> opt/local/lib/R/include -I/opt/local/include/graphviz - >>> DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=14 -I/opt/local/include - >>> D__NO_MATH_INLINES -fPIC -O2 -c LL_funcs.c -o LL_funcs.o >>> In file included from /opt/local/include/graphviz/gvc.h:20, >>> from common.h:30, >>> from LL_funcs.c:1: >>> /opt/local/include/graphviz/types.h:27:1: warning: "TRUE" redefined >>> In file included from common.h:5, >>> from LL_funcs.c:1: >>> /opt/local/lib/R/include/Rdefines.h:148:1: warning: this is the >>> location of the previous definition >>> In file included from LL_funcs.c:1: >>> common.h:41:20: error: gvcint.h: No such file or directory >>> common.h:42:21: error: globals.h: No such file or directory >>> make: *** [LL_funcs.o] Error 1 >>> chmod: /opt/local/lib/R/library/Rgraphviz/libs/*: No such file or >>> directory >>> ERROR: compilation failed for package 'Rgraphviz' >>> ** Removing '/opt/local/lib/R/library/Rgraphviz' >>> >>> I've already tried removing the gvcint.h and globals.h includes from >>> common.h, but I then get: >>> >>> [...] >>> graphvizVersion.c: In function 'Rgraphviz_graphvizVersion': >>> graphvizVersion.c:24: error: dereferencing pointer to incomplete >>> type >>> >>> >>> ********** >>> >>> Thanks guys for adressing this. My graphviz (2.14-1 from >>> MacPorts) is >>> missing the following headers compared to Ryan's 2.12: >>> >>> aghdr.h >>> agxbuf.h >>> arith.h (back as of 2.14-3) >>> ast_common.h >>> dthdr.h >>> exgram.h >>> exlib.h >>> expr.h >>> globals.h (requested by Rgraphviz) >>> grammar.h >>> gvcint.h (requested by Rgraphviz) >>> libgraph.h >>> logic.h >>> malloc.h >>> parser.h >>> pathplan.h >>> pathutil.h >>> solvers.h >>> tri.h >>> triefa.h >>> vis.h >>> vispath.h >>> vmstub.h >>> >>> To clarify matters, the Rgraphviz is an external R package that >>> depends on the Bioconductor package, so the R developers might not >>> know about it. R builds fine using the current MacPorts version >>> (don't know about the devel), and so does Bioconductor, but neither >>> depend on graphviz as such. >>> >>> The maintainers of Rgraphviz have already made a good effort in that >>> package's header files to accomodate different versions of graphviz >>> (up to 2.10 at least), so this is hopefully what they need to >>> know to >>> update the Rgraphviz package. I'm forwarding this to the >>> bioconductor >>> mailing list. >>> >>> >>> best, >>> >>> /Emil >>> >>> _______________________________________________ >>> Bioconductor mailing list >>> Bioconductor at stat.math.ethz.ch >>> https://stat.ethz.ch/mailman/listinfo/bioconductor >>> Search the archives: >>> http://news.gmane.org/gmane.science.biology.informatics.conductor >>> >> >> >
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