rma data retrieve
1
0
Entering edit mode
Jianping Jin ▴ 890
@jianping-jin-1212
Last seen 9.6 years ago
Dear list, I used to get/use/display rma normalized expression values by the command eset at exprs[] after computing expression with rma. It looks that something has changed in R 2.6 and BioConductor 2.1 with affy_1.16.0. Implementation of the command gives out an error message: no slot of name "exprs" for this object of class "ExpressionSet". Checking with "str" did not give me any useful info either. Any idea about it? thanks, Jianping ################################## Jianping Jin Ph.D. Bioinformatics scientist Center for Bioinformatics Room 3133 Bioinformatics building CB# 7104 University of Chapel Hill Chapel Hill, NC 27599 Phone: (919)843-6105 FAX: (919)843-3103 E-Mail: jjin at email.unc.edu
• 836 views
ADD COMMENT
0
Entering edit mode
@benilton-carvalho-1375
Last seen 4.1 years ago
Brazil/Campinas/UNICAMP
use exprs() eg.: exprs(eset) on your summarized obj. b On Oct 23, 2007, at 3:38 PM, Jianping Jin wrote: > Dear list, > > I used to get/use/display rma normalized expression values by the > command > eset at exprs[] after computing expression with rma. It looks that > something > has changed in R 2.6 and BioConductor 2.1 with affy_1.16.0. > Implementation > of the command gives out an error message: no slot of name "exprs" > for this > object of class "ExpressionSet". Checking with "str" did not give > me any > useful info either. Any idea about it? > > thanks, > > Jianping
ADD COMMENT
0
Entering edit mode
Thanks! JP- --On Tuesday, October 23, 2007 3:44 PM -0400 Benilton Carvalho <bcarvalh at="" jhsph.edu=""> wrote: > use > > exprs() > > eg.: exprs(eset) > > on your summarized obj. > > b > > On Oct 23, 2007, at 3:38 PM, Jianping Jin wrote: > >> Dear list, >> >> I used to get/use/display rma normalized expression values by the >> command >> eset at exprs[] after computing expression with rma. It looks that >> something >> has changed in R 2.6 and BioConductor 2.1 with affy_1.16.0. >> Implementation >> of the command gives out an error message: no slot of name "exprs" >> for this >> object of class "ExpressionSet". Checking with "str" did not give >> me any >> useful info either. Any idea about it? >> >> thanks, >> >> Jianping ################################## Jianping Jin Ph.D. Bioinformatics scientist Center for Bioinformatics Room 3133 Bioinformatics building CB# 7104 University of Chapel Hill Chapel Hill, NC 27599 Phone: (919)843-6105 FAX: (919)843-3103 E-Mail: jjin at email.unc.edu
ADD REPLY

Login before adding your answer.

Traffic: 837 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6