Question: cannot allocate vector of size 73 kb, in made4
12.0 years ago by
Amin Moghaddasi • 130
Amin Moghaddasi • 130 wrote:
Dear All, This has been asked several times before in different threads, However this error seems to be a 32bit windows OS memory usage related to R. Although I am using Dual Core Processor with 2GB of RAM running kubuntu Gutsy version 7.10, However I've got the same error "can not allocate vector of size 73 kb" as well. I'm not sure whether this is related to the specific function/package that I'm using, since I've got exactly the same size of 73 kb, on two different machines! (the above machine, and the other with 4GB RAM !!) The function that I wanted to use is "cia" in "made4" package version 1.12. Basically what I've done is: > data1723 <- read.csv('1723.csv',header=TRUE,row.names="geneNames") > data2224 <- read.csv('2224.csv',header=TRUE,row.names="geneNames") > coin <- cia(data1723,data2224) Error: cannot allocate vector of size 73 Kb > > dim(data1723)  9335 24 > dim(data2224)  9335 24 > sessionInfo() R version 2.6.0 (2007-10-03) i486-pc-linux-gnu locale: LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US .UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US. UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8 ;LC_IDENTIFICATION=C attached base packages:  stats graphics grDevices utils datasets methods base other attached packages:  made4_1.12.1 ade4_1.4-5 loaded via a namespace (and not attached):  rcompgen_0.1-17 > traceback() 4: unlist(vlist, recursive = FALSE, use.names = FALSE) 3: data.frame(tabcoiner) 2: coinertia(t.dudi(coa1), t.dudi(coa2), nf = cia.nf, scan = cia.scan, ...) 1: cia(data1723, data2224) --- $ free -m total used free shared buffers cached Mem: 3424 3320 103 0 5 115 -/+ buffers/cache: 3200 223 Swap: 6000 81 5919 Any sugestions are appreciated, Regards, Amin.
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