GO analysis for time-series data
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@srinivas-iyyer-939
Last seen 8.1 years ago
dear group, What are the GO analysis methods for time series data analysis. experiment: 50 samples (cell line) treated with drug 4 time points (2hr, 4hr, 8hr, 24hr) Once the clusters of genes identified for 2,4,8 and 24 hrs, what are the steps to identify over represented GO groups. could any expert help me how to proceed further. thank you srini
GO GO • 778 views
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Ana Conesa ▴ 130
@ana-conesa-2246
Last seen 8.1 years ago
Dear Srini, please, take a look to the following manuscript as provides a methodology for GO analysis of time series data Minguez, P., Al-Shahrour, F., Dopazo, J. (2006) A function-centric approach to the biological interpretation of microarray time-series Genome Informatics Series Vol.17 No.2 (pg 57-66) 2006 ISSN:0919-9454 Ana Conesa > > >---- Mensaje Original ---- >De: srini_iyyer_bio at yahoo.com >Para: bioconductor at stat.math.ethz.ch >Asunto: RE: [BioC] GO analysis for time-series data >Fecha: Tue, 6 Nov 2007 16:58:27 -0800 (PST) > >>dear group, >> >>What are the GO analysis methods for time series data >>analysis. >> >>experiment: >> >>50 samples (cell line) treated with drug >>4 time points (2hr, 4hr, 8hr, 24hr) >> >>Once the clusters of genes identified for 2,4,8 and 24 >>hrs, what are the steps to identify over represented >>GO groups. >> >>could any expert help me how to proceed further. >>thank you >>srini >> >>_______________________________________________ >>Bioconductor mailing list >>Bioconductor at stat.math.ethz.ch >>https://stat.ethz.ch/mailman/listinfo/bioconductor >>Search the archives: http://news.gmane.org/gmane.science.biology.inf >ormatics.conductor >>
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