exonmap questions
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Jianping Jin ▴ 890
@jianping-jin-1212
Last seen 8.4 years ago
Dear list, I am trying to use exonmap to analyze an Affy exon array data. I am wondering if there is a detailed instruction available which can help me to start the process (e.g. MySQL installation and setting up connection of the database with exonmap)? Another question I have is if I can install MySQL onto my desktop (32-bit machine) to work with exonmap or I have to install the database onto a 64-bit machine? I appreciate any help you could provide! Jianping ################################## Jianping Jin Ph.D. Bioinformatics scientist Center for Bioinformatics Room 3133 Bioinformatics building CB# 7104 University of Chapel Hill Chapel Hill, NC 27599 Phone: (919)843-6105 FAX: (919)843-3103 E-Mail: jjin at email.unc.edu
affy PROcess exonmap affy PROcess exonmap • 787 views
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@james-w-macdonald-5106
Last seen 9 hours ago
United States
Hi Jianping, There is a detailed INSTALL.TXT that comes with the MySQL download: http://xmap.picr.man.ac.uk/download/#1 And I think you will definitely need a 64 bit comp to use it. If you don't have access to such a machine, you might consider using aroma.affymetrix which is designed to run without much RAM. Best, Jim Jianping Jin wrote: > Dear list, > > I am trying to use exonmap to analyze an Affy exon array data. I am > wondering if there is a detailed instruction available which can help me to > start the process (e.g. MySQL installation and setting up connection of the > database with exonmap)? Another question I have is if I can install MySQL > onto my desktop (32-bit machine) to work with exonmap or I have to install > the database onto a 64-bit machine? > > I appreciate any help you could provide! > > Jianping > > > ################################## > Jianping Jin Ph.D. > Bioinformatics scientist > Center for Bioinformatics > Room 3133 Bioinformatics building > CB# 7104 > University of Chapel Hill > Chapel Hill, NC 27599 > Phone: (919)843-6105 > FAX: (919)843-3103 > E-Mail: jjin at email.unc.edu > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- James W. MacDonald, M.S. Biostatistician Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623
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Thanks Jim! JP- --On Tuesday, December 04, 2007 5:22 PM -0500 "James W. MacDonald" <jmacdon at="" med.umich.edu=""> wrote: > Hi Jianping, > > There is a detailed INSTALL.TXT that comes with the MySQL download: > > http://xmap.picr.man.ac.uk/download/#1 > > And I think you will definitely need a 64 bit comp to use it. If you > don't have access to such a machine, you might consider using > aroma.affymetrix which is designed to run without much RAM. > > Best, > > Jim > > > > Jianping Jin wrote: >> Dear list, >> >> I am trying to use exonmap to analyze an Affy exon array data. I am >> wondering if there is a detailed instruction available which can help me >> to start the process (e.g. MySQL installation and setting up connection >> of the database with exonmap)? Another question I have is if I can >> install MySQL onto my desktop (32-bit machine) to work with exonmap or >> I have to install the database onto a 64-bit machine? >> >> I appreciate any help you could provide! >> >> Jianping >> >> >> ################################## >> Jianping Jin Ph.D. >> Bioinformatics scientist >> Center for Bioinformatics >> Room 3133 Bioinformatics building >> CB# 7104 >> University of Chapel Hill >> Chapel Hill, NC 27599 >> Phone: (919)843-6105 >> FAX: (919)843-3103 >> E-Mail: jjin at email.unc.edu >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor > > -- > James W. MacDonald, M.S. > Biostatistician > Affymetrix and cDNA Microarray Core > University of Michigan Cancer Center > 1500 E. Medical Center Drive > 7410 CCGC > Ann Arbor MI 48109 > 734-647-5623 ################################## Jianping Jin Ph.D. Bioinformatics scientist Center for Bioinformatics Room 3133 Bioinformatics building CB# 7104, Campus Phone: (919)843-6105 FAX: (919)843-3103 E-Mail: jjin at unc.edu
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