Dear group, In GOvis.pdf , vignette for GOstats on page 7, code snippet for representing a pie-chart there are some objects that are difficult to guess their origin. I request if any one can suggest how they can be created. 1. "gCClo" This object was first mentioned on page 8: plotPieChart(gCClo, ctmat) I am not sure what is gCClo. Could any one help me understand here. Thanks ________________________________________________________________ ____________________ Never miss a thing. Make Yahoo your home page.

Srinivas -- GOstats (and many Bioconductor packages) contains the 'source' file for its vignettes. The files are LaTeX + Sweave, combining mark-up for display, with R commands for evalution. The file is at > fl <- system.file(file.path("doc", "GOvis.Rnw"), package="GOstats") Probably you could read this in any editor that understands plain text, but you can process the file to extract just the R commands, in the order they were evaluated to produce the vignette, with > Stangle(fl) Martin Srinivas Iyyer <srini_iyyer_bio at="" yahoo.com=""> writes: > Dear group, > > In GOvis.pdf , vignette for GOstats on page 7, code > snippet for representing a pie-chart there are some > objects that are difficult to guess their origin. I > request if any one can suggest how they can be > created. > > 1. "gCClo" > > This object was first mentioned on page 8: > plotPieChart(gCClo, ctmat) > > > I am not sure what is gCClo. > > Could any one help me understand here. > > Thanks > > > > ______________________________________________________________ ______________________ > Never miss a thing. Make Yahoo your home page. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Martin Morgan Computational Biology / Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: Arnold Building M2 B169 Phone: (206) 667-2793