Updating Bioconductor with standard R tools: what repository?
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@martin-morgan-1513
Last seen 4 days ago
United States
Hi Joh The specific answer depends on the version of R, but is accessible with > source('http://bioconductor.org/biocLite.R') > biocinstallRepos() These are the repositories for the 'repos=' argument of update.packages. I don't know what 'setResetRepositories' is. Martin Johannes Graumann <johannes_graumann at="" web.de=""> writes: > Hi, > After having installed Bioconductor into my R installation (Linux) using the > installation script, I would like to include all its packages it into the > standard update routine invoked by 'update.packages()'. > Which repository do I have to give 'setResetRepositories()'to achieve this? > > Thanks, Joh > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Martin Morgan Computational Biology / Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: Arnold Building M2 B169 Phone: (206) 667-2793
Cancer Cancer • 566 views
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