Entering edit mode
Paul Shannon
▴
10
@paul-shannon-2630
Last seen 9.6 years ago
Hi all,
I have encountered a puzzling problem with the ever-reliable
hyperGTest function. It
runs the usual amount of time (30 or more seconds) and then fails
with the message
that 'GOHyperGResult' is not defined. Here is the whole of my
session, with sessionInfo
attached.
Any ideas? Thanks!
- Paul
> library (Category)
> library (org.Hs.eg.db)
> library (GO)
> genes = c ("8038", "259", "51529", "164", "335", "336", "338",
"341")
> params = new ("GOHyperGParams", geneIds=genes,
annotation='org.Hs.eg.db', ontology='BP')
> hgr.bp = hyperGTest (params)
Error in getClass(Class, where = topenv(parent.frame())) :
c("\"GOHyperGResult\" is not a defined class", "\"BPHyperGResult\"
is not a defined class")
> sessionInfo ()
R version 2.6.1 (2007-11-26)
i386-apple-darwin8.10.1
locale:
C
attached base packages:
[1] splines tools stats graphics grDevices utils
datasets methods base
other attached packages:
[1] GO_1.17.0 org.Hs.eg.db_2.0.2 Category_2.4.0
genefilter_1.16.0 survival_2.34 annotate_1.16.0
xtable_1.5-1
[8] AnnotationDbi_1.0.6 RSQLite_0.6-2 DBI_0.2-3
graph_1.15.17 Biobase_1.16.0
loaded via a namespace (and not attached):
[1] RBGL_1.13.6 cluster_1.11.9
