Question: affy mouse promoter tiling array analysis
gravatar for Naira Naouar
11.6 years ago by
Naira Naouar140
Naira Naouar140 wrote:
Hi, I just found out that Mahong Dai proposed some tiling arrays custom cdfs that can be found here: _download_v10.asp The way this CDFs were built is described in this paper: Hope this will help. Regards, Naira Yanqin Yang wrote: > Hello, > > I have four CHIP-on-chip datasets on affymetrix mouse promoter 1.0 R array, which are duplicate for both target protein and control group. By using makePlatformDesign and oligo packages, I have successfully read in the *.cel files. Now, I am stuck for the next step. Which package should I use for normalization and further statistic analysis? This is my first time dealing with CHIP-chip tiling array. Would anyone kindly help me out? > > Really appreciate your help! > > Yanqin > > > --------------------------------- > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at > > Search the archives: > -- ================================================================== Naira Naouar Tel:+32 (0)9 331 38 63 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM nanao at
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