Sean Davis wrote: > On Wed, May 7, 2008 at 6:29 PM, mb23 <mb23 at="" net.hr=""> wrote: >> I mean that we wanted to compare CNV between 2 individuals of the same species by putting it on the >> Danio (zebrafish) CGH array. This fish is according to our previous data quite syntenic to Danio, >> although the year 100 millions years apart. >> So I am asking if anybody did something like Human to Chimp hybe, or any other on CGH? >> thank you! > > If you have an assembled genome (or parts of one), then it is pretty > simple to use a program like Blat, gmap, etc. to realign the sequences > on the array to the novel genome. Then, you can proceed as if the > array contained sequences for the new species. Or even Biostrings for the mapping...:-) > > Hope that helps. > Sean > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > -- Robert Gentleman, PhD Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 PO Box 19024 Seattle, Washington 98109-1024 206-667-7700 rgentlem at fhcrc.org