create Affymetrix .chp file for viewing in affy Integrated Genome Browser
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Shi, Tao ▴ 720
@shi-tao-199
Last seen 7.1 years ago
Hi list, I have my customized analysis results of a tiling array data set (signal changes, p values, and their corresponding chormosomal coordinates). Are there ways to package them into Affy .chp files so I can to view them in IGB? Or if you know any other applications that function like IGB, please also let me know. Thanks, ...Tao ________________________________________________________________ ____________________ [[elided Yahoo spam]] [[alternative HTML version deleted]]
affy affy • 737 views
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@kasper-daniel-hansen-2979
Last seen 13 months ago
United States
There are two my mind no facilities for this. The natural place for such functions would be affxparser (which I maintain) and right now we have no plans for such an addition). But IGB supports many different formats, most of which are super easy to write using write.table. For examples BED files (I think they are called). Look in the IGB manual for further info. There might even be a package that does this for you. Kasper On May 8, 2008, at 10:47 AM, Shi, Tao wrote: > Hi list, > > I have my customized analysis > results of a tiling array data set (signal changes, p values, and > their > corresponding chormosomal coordinates). Are there ways to package them > into Affy .chp files so I can to view them in IGB? Or if you know > any other applications that function like IGB, please also let me > know. > > Thanks, > > ...Tao > > > > ____________________________________________________________________ ________________ > > [[elided Yahoo spam]] > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
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