Question: Error in RCurl and GEOquery installation
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gravatar for Momin, Amin A
11.2 years ago by
Momin, Amin A20 wrote:
When I try installing RCurl package for the installation of GEOquery in RHEL5 I get the following error. I would be happy if some one can give me suggestion to solve this. > install.packages("RCurl") --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done trying URL 'http://cran.hostingzero.net/src/contrib/RCurl_0.9-3.tar.gz' Content type 'application/x-gzip' length 150822 bytes (147 Kb) opened URL ================================================== downloaded 147 Kb * Installing *source* package 'RCurl' ... checking for curl-config... no Cannot find curl-config ERROR: configuration failed for package 'RCurl' ** Removing '/usr/lib/R/library/RCurl' The downloaded packages are in /tmp/RtmprTpHXJ/downloaded_packages Updating HTML index of packages in '.Library' Warning message: In install.packages("RCurl") : installation of package 'RCurl' had non-zero exit status > Thanks Amin
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ADD COMMENTlink modified 11.2 years ago by Nathan.Watson-Haigh@csiro.au210 • written 11.2 years ago by Momin, Amin A20
Answer: Error in RCurl and GEOquery installation
0
gravatar for Elin Axelsson
11.2 years ago by
Elin Axelsson60 wrote:
Hi Amin, Are you sure you have libcurl installed? Best wishes, Elin Momin, Amin A wrote: > When I try installing RCurl package for the installation of GEOquery in RHEL5 I get the following error. > I would be happy if some one can give me suggestion to solve this. > > >> install.packages("RCurl") >> > --- Please select a CRAN mirror for use in this session --- > Loading Tcl/Tk interface ... done > trying URL 'http://cran.hostingzero.net/src/contrib/RCurl_0.9-3.tar.gz' > Content type 'application/x-gzip' length 150822 bytes (147 Kb) > opened URL > ================================================== > downloaded 147 Kb > > * Installing *source* package 'RCurl' ... > checking for curl-config... no > Cannot find curl-config > ERROR: configuration failed for package 'RCurl' > ** Removing '/usr/lib/R/library/RCurl' > > The downloaded packages are in > /tmp/RtmprTpHXJ/downloaded_packages > Updating HTML index of packages in '.Library' > Warning message: > In install.packages("RCurl") : > installation of package 'RCurl' had non-zero exit status > > > > > Thanks > > Amin > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >
ADD COMMENTlink written 11.2 years ago by Elin Axelsson60
Hi Elin , I am new linux user, have never used R in linux before. It would be great if you suggest me a server where I can download libcurl. I do have the curl package installed. Thanks, Amin ----- Original Message ----- From: "Elin Axelsson" <elin@ebi.ac.uk> To: "Amin A Momin" <aminmomin at="" gatech.edu=""> Cc: bioconductor at stat.math.ethz.ch Sent: Thursday, July 24, 2008 8:41:29 AM GMT -05:00 US/Canada Eastern Subject: Re: [BioC] Error in RCurl and GEOquery installation Hi Amin, Are you sure you have libcurl installed? Best wishes, Elin Momin, Amin A wrote: > When I try installing RCurl package for the installation of GEOquery in RHEL5 I get the following error. > I would be happy if some one can give me suggestion to solve this. > > >> install.packages("RCurl") >> > --- Please select a CRAN mirror for use in this session --- > Loading Tcl/Tk interface ... done > trying URL 'http://cran.hostingzero.net/src/contrib/RCurl_0.9-3.tar.gz' > Content type 'application/x-gzip' length 150822 bytes (147 Kb) > opened URL > ================================================== > downloaded 147 Kb > > * Installing *source* package 'RCurl' ... > checking for curl-config... no > Cannot find curl-config > ERROR: configuration failed for package 'RCurl' > ** Removing '/usr/lib/R/library/RCurl' > > The downloaded packages are in > /tmp/RtmprTpHXJ/downloaded_packages > Updating HTML index of packages in '.Library' > Warning message: > In install.packages("RCurl") : > installation of package 'RCurl' had non-zero exit status > > > > > Thanks > > Amin > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >
ADD REPLYlink written 11.2 years ago by Momin, Amin A20
Hi Amin > > checking for curl-config... no > > Cannot find curl-config > > ERROR: configuration failed for package 'RCurl' > > ** Removing '/usr/lib/R/library/RCurl' > You need libcurl development libraries installed. On Ubuntu 8.04, IIRC, using libcurl4-openssl-dev worked fine for me: Install on apt supported system: sudo apt-get install licurl4-openssl-dev Hope that helps, Arnar [[alternative HTML version deleted]]
ADD REPLYlink written 11.2 years ago by Arnar Flatberg70
Answer: Error in RCurl and GEOquery installation
0
gravatar for Nathan.Watson-Haigh@csiro.au
11.2 years ago by
You may also need to install the curl-devel package (which I think has curl-config). In addition, once R can fine curl-config, you may encounter a problem which I had, which seemed to be that Rcurl 0.9-3 mistook my system for a 64bit OS rather than a 32Bit OS. As a result, I was forced to install an older version of RCurl: http://www.omegahat.org/RCurl/RCurl_0.8-3.tar.gz Hope this helps, Nath -----Original Message----- From: bioconductor-bounces@stat.math.ethz.ch [mailto:bioconductor-bounces at stat.math.ethz.ch] On Behalf Of Momin, Amin A Sent: Friday, 25 July 2008 11:04 AM To: Elin Axelsson Cc: bioconductor at stat.math.ethz.ch Subject: Re: [BioC] Error in RCurl and GEOquery installation Hi Elin , I am new linux user, have never used R in linux before. It would be great if you suggest me a server where I can download libcurl. I do have the curl package installed. Thanks, Amin ----- Original Message ----- From: "Elin Axelsson" <elin@ebi.ac.uk> To: "Amin A Momin" <aminmomin at="" gatech.edu=""> Cc: bioconductor at stat.math.ethz.ch Sent: Thursday, July 24, 2008 8:41:29 AM GMT -05:00 US/Canada Eastern Subject: Re: [BioC] Error in RCurl and GEOquery installation Hi Amin, Are you sure you have libcurl installed? Best wishes, Elin Momin, Amin A wrote: > When I try installing RCurl package for the installation of GEOquery in RHEL5 I get the following error. > I would be happy if some one can give me suggestion to solve this. > > >> install.packages("RCurl") >> > --- Please select a CRAN mirror for use in this session --- > Loading Tcl/Tk interface ... done > trying URL 'http://cran.hostingzero.net/src/contrib/RCurl_0.9-3.tar.gz' > Content type 'application/x-gzip' length 150822 bytes (147 Kb) > opened URL > ================================================== > downloaded 147 Kb > > * Installing *source* package 'RCurl' ... > checking for curl-config... no > Cannot find curl-config > ERROR: configuration failed for package 'RCurl' > ** Removing '/usr/lib/R/library/RCurl' > > The downloaded packages are in > /tmp/RtmprTpHXJ/downloaded_packages > Updating HTML index of packages in '.Library' > Warning message: > In install.packages("RCurl") : > installation of package 'RCurl' had non-zero exit status > > > > > Thanks > > Amin > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > _______________________________________________ Bioconductor mailing list Bioconductor at stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
ADD COMMENTlink written 11.2 years ago by Nathan.Watson-Haigh@csiro.au210
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