There was also a recent thread about trying to deal wit CDFs for tiling arrays here: http://thread.gmane.org/gmane.science.biology.informatics.conductor/19 119 -steve On Jul 30, 2008, at 8:21 PM, Marc Carlson wrote: > Hi Mythily, > > Our annotation packages are currently based upon a combination of > sources from repositories at NCBI, UCSC, and Flybase to name a few. > We do not presently gather any data from the BDGP. However, if you > go the the BDGP website, I notice that they will actually refer you > to flybase for the latest annotations so perhaps what we offer is > not far from what you had in mind after all? > > You can learn more about how to use our annotation packages here. > And since it sounds like you want a custom annotation package, you > should be able to build one by following the instructions in the > SQLForge vignette at this same website: > > http://www.bioconductor.org/packages/2.2/bioc/html/AnnotationDbi.html > > > Let me know if you have further questions, > > > Marc > > > > > > mythilyg ganapathi wrote: >> Hello, >> I am a new user of bioconductor. It will be great if it can >> confirmed whether the CDF and Annotation packages are available for >> GeneChip? Drosophila Tiling 2.0R Array and BDGP Release 5 >> annotation, respectively. If they are not available could anybody >> specify how to integrate them in bioconductor (I am using affyImGUI >> software) >> Thanks >> Mythily >> >> >> >> [[alternative HTML version deleted]] >> >> >> ------------------------------------------------------------------- ----- >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor