Is anyone developing an extensible Galaxy-like interface for Bioconductor?
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@martin-morgan-1513
Last seen 3 months ago
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RWebServices offers a way to expose R packages as SOAP-based web services. http://bioconductor.org/packages/2.2/bioc/html/RWebServices.html Martin "Deanne Taylor" <dtaylor at="" hsph.harvard.edu=""> writes: > Dear all: > > Iis anyone aware of any projects creating an extensible platform that can act as an interface to Bioconductor that could be used to deliver Bioconductor methods to non-command-line-using users? > > To save some replies: > > * I am aware of limmaGUI and affylmGUI, but the tcl/tk interface is frustrating to some users who have difficulty installing tcl/tk independently while having R recognize it. Macs and some *nix have been particularly problematic for some reasons. > > * I am also aware of CARMAweb, bioconductor packages and a few other basic R-web-interfaces, but I would like something more extensible outside of the R framework that could work both in R and in Python/Perl for example. Something more modular. > > * I'm thinking something like Galaxy or Bioclipse. I realize Ross Lazarus is working on Rgenetics against Galaxy and Galaxy might be a good solution. > > If anyone is aware of other projects (beginning or ongoing or planned) in this area, I'd deeply appreciate getting pointers to them! > > Deanne > > > -- > > --- > Deanne Taylor PhD > Department of Biostatistics > Harvard School of Public Health > 655 Huntington Avenue > Boston, MA 02115 > Office: 617.432.2899 > Fax: 617.432.5619 > dtaylor at hsph.harvard.edu > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Martin Morgan Computational Biology / Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: Arnold Building M2 B169 Phone: (206) 667-2793
Cancer affylmGUI limmaGUI Cancer affylmGUI limmaGUI • 530 views
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