Questions regarding lumi
0
0
Entering edit mode
@ingrid-h-g-stensen-1971
Last seen 9.6 years ago
Hi I have two questions regarding the lumi package: If I use lumiR and the parameter checkDupId=FALSE I do not get the probeID when I extract the expression data using exprs. If checkDupId=TRUE the probeID is extracted together with the expression data. Any explanation why this parameter, checkDupId, controls this? In lumiT one can find this line: detectCall <- detectionCall(x.lumi, Th = 0.01, type = "matrix") Since it is two ways to export data from BeadStudio, in one of them Detection is used and in the other one Detection Pval is used. Since these two parameters have opposite ways (0-1 or 1-0) does not the use of Th=0.01 work best when one of the files is used and not when the other is? Regards, Ingrid [[alternative HTML version deleted]]
lumi lumi • 620 views
ADD COMMENT

Login before adding your answer.

Traffic: 657 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6