Question: RMAGEML installation and ArrayExpress database
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gravatar for John Lande
11.1 years ago by
John Lande280
John Lande280 wrote:
dear all, I need to import data from ArrayExpress, and I am tring RMAGEML. unluckly I retrive the following error during installation. what do I miss? is there any other package to andle ArrayExpress Data? > install.packages("RMAGEML") trying URL ' http://www.bioconductor.org/packages/2.2/bioc/src/contrib/RMAGEML_2.14 .0.tar.gz ' Content type 'application/x-gzip' length 4912894 bytes (4.7 Mb) opened URL ================================================== downloaded 4.7 Mb * Installing *source* package 'RMAGEML' ... configure: creating ./config.status config.status: creating src/Makevars ** libs During startup - Warning messages: 1: Setting LC_CTYPE failed, using "C" 2: Setting LC_TIME failed, using "C" 3: Setting LC_MESSAGES failed, using "C" 4: Setting LC_PAPER failed, using "C" 5: Setting LC_MEASUREMENT failed, using "C" gcc -std=gnu99 -I/usr/local/lib64/R/include -I/include -I/include/linux -I/usr/local/include -fpic -g -O2 -c rmageml.c -o rmageml.o rmageml.c: In function 'updateMAGEML': rmageml.c:599: warning: cast from pointer to integer of different size gcc -std=gnu99 -shared -L/usr/local/lib64 -o RMAGEML.so rmageml.o -L/jre/lib/amd64 -L/jre/lib/i386 -ljava -L/jre/lib/amd64/server -L/jre/lib/i386/client -ljvm /usr/bin/ld: cannot find -ljava collect2: ld returned 1 exit status make: *** [RMAGEML.so] Error 1 chmod: cannot access `/usr/local/lib64/R/library/RMAGEML/libs/*': No such file or directory ERROR: compilation failed for package 'RMAGEML' ** Removing '/usr/local/lib64/R/library/RMAGEML' The downloaded packages are in /tmp/RtmpEZsArx/downloaded_packages Updating HTML index of packages in '.Library' Warning message: In install.packages("RMAGEML") : installation of package 'RMAGEML' had non-zero exit status > sessionInfo() R version 2.7.2 (2008-08-25) x86_64-unknown-linux-gnu locale: C attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] tools_2.7.2 [[alternative HTML version deleted]]
rmageml arrayexpress • 638 views
ADD COMMENTlink written 11.1 years ago by John Lande280
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