Question: GO Term2entrezgene
0
gravatar for Weiwei Shi
11.2 years ago by
Weiwei Shi1.2k
Weiwei Shi1.2k wrote:
Hi, I am wondering if I can get a list (x) for BP category of GOTERM whose structure is like: x$GOTermID1: entrezgene id1, entrezgene id2..... x$GOTermID2: entrezgene id1, entrezgene id2..... ... I did not find any pdf which shows me how to get this. Thanks, -- Weiwei Shi, Ph.D Research Scientist GeneGO, Inc. "Did you always know?" "No, I did not. But I believed..." ---Matrix III [[alternative HTML version deleted]]
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ADD COMMENTlink modified 11.2 years ago by Sean Davis21k • written 11.2 years ago by Weiwei Shi1.2k
Answer: GO Term2entrezgene
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gravatar for Sean Davis
11.2 years ago by
Sean Davis21k
United States
Sean Davis21k wrote:
On Mon, Oct 13, 2008 at 12:18 PM, Weiwei Shi <helprhelp at="" gmail.com=""> wrote: > Hi, > > I am wondering if I can get a list (x) for BP category of GOTERM whose > structure is like: > > x$GOTermID1: entrezgene id1, entrezgene id2..... > x$GOTermID2: entrezgene id1, entrezgene id2..... > ... > > I did not find any pdf which shows me how to get this. You didn't mention what organism you want or your sessionInfo(), but assuming human and R-2.7 or later: library(org.Hs.eg.db) x <- as.list(org.Hs.egGO2ALLEGS) This will give you all the GO terms. You could limit to BP by using the GO package to find all GOBPOFFSPRING. Sean
ADD COMMENTlink written 11.2 years ago by Sean Davis21k
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