AnnotationDbi- Problem loading new Arabdiopsis annotation package
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Samuel Wuest ▴ 330
@samuel-wuest-2821
Last seen 9.6 years ago
Hi all, I have just installed R version 2.8.0 and the updated to the new Bioconductor-version 2.3 packages. I have used SQLForge to create a new annotation package for the Arabidopsis Chip (using a custom-made annotation package); I have successfully installed the new package, but the loading requires a chrlengths-table, which does not exist for the Arabidopsis base-level annotation database (as discussed in the thread "Arabidopsis chromosome location mappings"). So I got the following error: >library(TinesATH1b.db) Loading required package: DBI Error in sqliteExecStatement(con, statement, bind.data) : RS-DBI driver: (error in statement: no such table: chrlengths) Error : .onLoad failed in 'loadNamespace' for 'TinesATH1b.db' Error: package/namespace load failed for 'TinesATH1b.db' Is there a way around the problem? Or is it necessary to include a chrlengths-annotation in the Arabidopsis base-level package? Or is the error not really related to the missing chrlengths-table? Thanks a million for further help! Best wishes, Sam > sessionInfo() R version 2.8.0 (2008-10-20) i386-apple-darwin8.11.1 locale: en_IE.UTF-8/en_IE.UTF-8/C/C/en_IE.UTF-8/en_IE.UTF-8 attached base packages: [1] tools stats graphics grDevices utils datasets methods base other attached packages: [1] RSQLite_0.7-1 DBI_0.2-4 AnnotationDbi_1.4.0 Biobase_2.2.0 [[alternative HTML version deleted]]
Annotation Annotation • 794 views
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