Thanks Guido, I haven't seen that thread, it is indeed the very same problem, and a fix is obviously on the way... Sorry! Best, Sam 2008/11/4 Hooiveld, Guido <guido.hooiveld@wur.nl> > > Hi, > I think this is related to this thread: > http://article.gmane.org/gmane.science.biology.informatics.conductor /20483 > > G > > > > > -----Original Message----- > > From: bioconductor-bounces@stat.math.ethz.ch > > [mailto:bioconductor-bounces@stat.math.ethz.ch] On Behalf Of > > Samuel Wuest > > Sent: 04 November 2008 12:37 > > To: bioconductor@stat.math.ethz.ch > > Subject: [BioC] AnnotationDbi- Problem loading new > > Arabdiopsis annotationpackage > > > > Hi all, > > > > I have just installed R version 2.8.0 and the updated to the > > new Bioconductor-version 2.3 packages. I have used SQLForge > > to create a new annotation package for the Arabidopsis Chip > > (using a custom-made annotation package); I have successfully > > installed the new package, but the loading requires a > > chrlengths-table, which does not exist for the Arabidopsis > > base-level annotation database (as discussed in the thread > > "Arabidopsis chromosome location mappings"). > > > > So I got the following error: > > >library(TinesATH1b.db) > > > > Loading required package: DBI > > Error in sqliteExecStatement(con, statement, bind.data) : > > RS-DBI driver: (error in statement: no such table: > > chrlengths) Error : .onLoad failed in 'loadNamespace' for > > 'TinesATH1b.db' > > Error: package/namespace load failed for 'TinesATH1b.db' > > Is there a way around the problem? Or is it necessary to > > include a chrlengths-annotation in the Arabidopsis base-level > > package? Or is the error not really related to the missing > > chrlengths-table? > > > > Thanks a million for further help! > > > > Best wishes, Sam > > > > > sessionInfo() > > R version 2.8.0 (2008-10-20) > > i386-apple-darwin8.11.1 > > > > locale: > > en_IE.UTF-8/en_IE.UTF-8/C/C/en_IE.UTF-8/en_IE.UTF-8 > > > > attached base packages: > > [1] tools stats graphics grDevices utils > > datasets methods > > base > > > > other attached packages: > > [1] RSQLite_0.7-1 DBI_0.2-4 AnnotationDbi_1.4.0 > > Biobase_2.2.0 > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor@stat.math.ethz.ch > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > Search the archives: > > http://news.gmane.org/gmane.science.biology.informatics.conductor > > > > > > > [[alternative HTML version deleted]]