Question

question about 385K nimblegen microarray data analysis

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Kan Huang ▴ 10

@kan-huang-3137

Last seen 9.6 years ago

Hello everybody I was wondering if anyone has tried to use Bioconductor to analyze 385K one-color nimblegen microarray data? Could some one point me a direction please? Many thanks Kan

Microarray Microarray • 646 views

ADD COMMENT • link updated 15.5 years ago by Sean Davis 21k • written 15.5 years ago by Kan Huang ▴ 10

score 0 · Answer 1 · 2008-11-13

On Thu, Nov 13, 2008 at 10:48 AM, Kan Huang <kh4mr@virginia.edu> wrote: > Hello everybody > > I was wondering if anyone has tried to use Bioconductor to analyze 385K > one-color nimblegen microarray data? Could some one point me a direction > please? > What type of experiment? Expression, chip-chip, tiling expression? And by "analyze" you mean read in the data and normalize it? You could look at the Oligo package for that. Sean [[alternative HTML version deleted]]

score 0 · Answer 2 · 2008-11-13

On Thu, Nov 13, 2008 at 12:55 PM, Kan Huang <kh4mr@virginia.edu> wrote: > Hi Sean, > > Thank you for the reply. > The experiment type is expression and I am trying to read the data and > normalize it. > Could you provide more information on this please? You may want to look at the Oligo package. Sean > > > On Thu, Nov 13, 2008 at 12:32 PM, Sean Davis <sdavis2@mail.nih.gov> wrote: > > > > > > On Thu, Nov 13, 2008 at 10:48 AM, Kan Huang <kh4mr@virginia.edu> wrote: > >> > >> Hello everybody > >> > >> I was wondering if anyone has tried to use Bioconductor to analyze 385K > >> one-color nimblegen microarray data? Could some one point me a > direction > >> please? > > > > What type of experiment? Expression, chip-chip, tiling expression? And > by > > "analyze" you mean read in the data and normalize it? You could look at > the > > Oligo package for that. > > > > Sean > > > > > > > [[alternative HTML version deleted]]