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Question: hmCEU_YRI_chr22_Foundersfbat.ped file for GeneticsBase
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gravatar for Luis F
9.0 years ago by
Luis F20
Luis F20 wrote:
Dear Mailing List, I am looking for the files: hmCEU_YRI_chr22_Foundersfbat.ped hmCEU_YRI_chr22_ALLfbat.ped which are used in the GeneticsBase package and tutorial. I've searched in the Bioconductor data experiment data http://www.bioconductor.org/packages/release/data/experiment/ on Greg Warne's page: http://www.warnes.net/GregsSoftwareLinks When I use what's suggested in the tutorial I get an error: Warning: unable to access index for repository http://www.warnes.net/bioc2007/src/contrib I'm very sure these files are under my nose; but I can't get them. Any hints? Thanks, Tiago
ADD COMMENTlink modified 9.0 years ago • written 9.0 years ago by Luis F20
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gravatar for Luis F
9.0 years ago by
Luis F20
Luis F20 wrote:
Dear Martin, Mailing List, Thank you so much for your prompt reply. Very embarrassing? The files I was looking for are on the "doc" folder, on the GeneticsBase package folder, which lives in the R library folder I use a Mac MacBook Pro and I had done a find for the file name. I had no results. From what I am understanding now the find does not search on the library folder. I was unaware of this. This mailing list and this system is great Tiago Martin Morgan wrote: > Luis F <tiago17 at="" gmail.com=""> writes: > > >> Dear Mailing List, >> >> I am looking for the files: >> >> hmCEU_YRI_chr22_Foundersfbat.ped >> hmCEU_YRI_chr22_ALLfbat.ped >> >> which are used in the GeneticsBase package and tutorial. >> >> I've searched in the Bioconductor data experiment data >> http://www.bioconductor.org/packages/release/data/experiment/ >> on Greg Warne's page: >> http://www.warnes.net/GregsSoftwareLinks >> >> When I use what's suggested in the tutorial >> I get an error: >> Warning: unable to access index for repository >> http://www.warnes.net/bioc2007/src/contrib >> >> I'm very sure these files are under my nose; but I can't get them. Any >> hints? >> > > They should be visible at > > >> list.files(system.file("doc", package="GeneticsBase"), ".*ped$") >> > [1] "hmCEU_YRI_chr22_ALLfbat.ped" "hmCEU_YRI_chr22_Foundersfbat.ped" > > This is with GeneticsBase version 1.8.0, in R version 2.8.0. > > Martin > > >> Thanks, >> Tiago >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >> > > -- http://agitar-antes-de-usar.blogspot.com/
ADD COMMENTlink written 9.0 years ago by Luis F20
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