Question: biomaRt with multiple databases/datasets?
gravatar for T Joshi
9.2 years ago by
T Joshi90
T Joshi90 wrote:
Hi, I was wondering if it is possible to use biomaRt package with multiple databases and hence datasets. I want to retrieve GO information using ensembl geneIDs. I use the following : attributes=c("ensembl_gene_id","go_biological_process_id","go_cellular _component_id", "go_biological_process_id", "go_biological_process_linkage_type", "go_cellular_component_linkage_type","go_molecular_function_linkage_ty pe"), and filters="ensembl_gene_id", for a "mart" object which uses ensembl database. I would like to see the names of pathways and reactions in which this gene is involved. Could we do so using biomaRt? cheers, Josh
ADD COMMENTlink written 9.2 years ago by T Joshi90
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 212 users visited in the last hour