biomaRt with multiple databases/datasets?
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T Joshi ▴ 90
@t-joshi-3142
Last seen 8.1 years ago
Hi, I was wondering if it is possible to use biomaRt package with multiple databases and hence datasets. I want to retrieve GO information using ensembl geneIDs. I use the following : attributes=c("ensembl_gene_id","go_biological_process_id","go_cellular _component_id", "go_biological_process_id", "go_biological_process_linkage_type", "go_cellular_component_linkage_type","go_molecular_function_linkage_ty pe"), and filters="ensembl_gene_id", for a "mart" object which uses ensembl database. I would like to see the names of pathways and reactions in which this gene is involved. Could we do so using biomaRt? cheers, Josh
Pathways GO biomaRt Pathways GO biomaRt • 654 views
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