Question: Installing "lumi" package failure
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10.9 years ago by
Gundala Viswanath230 wrote:
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modified 10.9 years ago by Joern Toedling720 • written 10.9 years ago by Gundala Viswanath230
0
10.9 years ago by
Joern Toedling720 wrote:
Hello Gundula, this might be a problem of conflicting package versions. I presume that this line indicates that some Bioconductor packages are older versions matching the outdated R-2.6 > argument 'lib' is missing: using > '/home/gundala/R/x86_64-pc-linux-gnu-library/2.6' To make sure that all the required packages are up to date and can work with each other, I suggest you do the following: 1.) define an environment variable R_LIBS, for example by adding the following to the file $HOME/.bashrc: R_LIBS=$HOME/rpacks export R_LIBS and create that directory \$HOME/rpacks. 2.) do a fresh Bioc install, using biocLite(), and this time the packages will be installed into the just created directory. 3.) Whenever you update the version of R that you are working with, follow the instructions for updating Bioc packages to the current version, to be found at the bottom of this page: http://www.bioconductor.org/docs/install Once these steps are done, the installation of "lumi" and other released packages should work. If the error persists, please get back to the list and provide the output of sessionInfo() following the error. Best regards, Joern