Analysing RNA-seq data
1
0
Entering edit mode
Ingunn Berget ▴ 150
@ingunn-berget-1066
Last seen 7.9 years ago
Are there any packages in Bioconductor for analysing RNA-seq data? Ingunn Berget (Dr. Scient) UMB, box 5003, IHA 1432 ?s Norway Centre for Integrative Genetics, www.cigene.no Centre for Biospectroscopy and Data Modelling, www.specmod.org
Genetics Genetics • 485 views
ADD COMMENT
0
Entering edit mode
@michael-lawrence-2759
Last seen 7.9 years ago
On Thu, Feb 12, 2009 at 1:18 AM, Ingunn Berget <ingunn.berget@umb.no> wrote: > Are there any packages in Bioconductor for analysing RNA-seq data? > The short answer is no, nothing explicitly for RNA-seq. However, there's a collection of tools for analyzing general high-throughput sequencing data. ShortRead for preprocessing, Biostrings for sequence matching/alignment, IRanges for manipulating interval data, rtracklayer for working with genomic annotation data and interfacing with the UCSC genome browser, HilbertVisGUI for visualization, and there's several more. One might anticipate that these tools will soon evolve to address the specific RNA-seq use case. Michael > > Ingunn Berget (Dr. Scient) > UMB, box 5003, IHA > 1432 ├ůs > Norway > > Centre for Integrative Genetics, www.cigene.no > Centre for Biospectroscopy and Data Modelling, www.specmod.org > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > [[alternative HTML version deleted]]
ADD COMMENT

Login before adding your answer.

Traffic: 381 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6